SMTL ID : 4ck7.1

Pseudo-atomic model of microtubule-bound human kinesin-5 motor domain in presence of adp.alfx (NECK-LINKER IN ITS DISCONNECTED CONFORMATION, based on cryo-electron microscopy experiment

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 9.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 1 residues within 4Å: Ligands: GTP.2 Protein-ligand interaction information (PLIP) not available MG.5: 2 residues within 4Å: Ligands: AF3.6, ADP.7 Protein-ligand interaction information (PLIP) not available

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 11 residues within 4Å: Chain A: G.10, Q.11, A.12, S.140, G.142, G.143, G.144, T.145, Y.172, P.173 Ligands: MG.1 Protein-ligand interaction information (PLIP) not available

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 6 residues within 4Å: Chain B: G.10, Q.11, C.12, G.141, G.142, T.143 Protein-ligand interaction information (PLIP) not available

1 x TA1: TAXOL(Non-covalent)

TA1.4: 6 residues within 4Å: Chain B: V.23, D.224, L.228, A.231, R.276, G.360 Protein-ligand interaction information (PLIP) not available

1 x AF3: ALUMINUM FLUORIDE(Non-covalent)

AF3.6: 4 residues within 4Å: Chain C: T.107, S.232 Ligands: MG.5, ADP.7 Protein-ligand interaction information (PLIP) not available

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.7: 9 residues within 4Å: Chain C: N.29, T.107, G.108, T.109, G.110, K.111, T.112 Ligands: MG.5, AF3.6 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goulet, A. et al., Comprehensive Structural Model of the Mechanochemical Cycle of a Mitotic Motor Highlights Molecular Adaptations in the Kinesin Family. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-02-05

Peptides

TUBULIN ALPHA-1D CHAIN: A
TUBULIN BETA-2B CHAIN: B
KINESIN-LIKE PROTEIN KIF11: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

TUBULIN ALPHA-1D CHAIN

TUBULIN BETA-2B CHAIN

KINESIN-LIKE PROTEIN KIF11

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