SMTL ID : 4cki.1

Crystal Structure of oncogenic RET tyrosine kinase M918T bound to adenosine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

16 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: R.174, L.196, K.208, G.212, R.213 Ligand excluded by PLIP FMT.2: 8 residues within 4Å: Chain A: G.1, P.2, L.3, S.4 Chain B: Q.211, L.224, F.225, H.227 Ligand excluded by PLIP FMT.3: 3 residues within 4Å: Chain A: Y.110, R.145, R.187 Ligand excluded by PLIP FMT.4: 7 residues within 4Å: Chain A: G.34, E.35, F.36, G.37, V.39, K.59, D.193 Ligand excluded by PLIP FMT.5: 1 residues within 4Å: Chain A: T.55 Ligand excluded by PLIP FMT.6: 5 residues within 4Å: Chain A: R.118, T.247, L.248, G.249, G.250 Ligand excluded by PLIP FMT.7: 4 residues within 4Å: Chain A: H.85, H.87, W.157, Q.161 Ligand excluded by PLIP FMT.8: 6 residues within 4Å: Chain A: S.68, K.208, S.210, R.213 Chain B: S.210 Ligands: FMT.17 Ligand excluded by PLIP FMT.10: 5 residues within 4Å: Chain B: R.174, L.196, K.208, G.212, R.213 Ligand excluded by PLIP FMT.11: 8 residues within 4Å: Chain A: Q.211, L.224, F.225, H.227 Chain B: G.1, P.2, L.3, S.4 Ligand excluded by PLIP FMT.12: 3 residues within 4Å: Chain B: Y.110, R.145, R.187 Ligand excluded by PLIP FMT.13: 7 residues within 4Å: Chain B: G.34, E.35, F.36, G.37, V.39, K.59, D.193 Ligand excluded by PLIP FMT.14: 1 residues within 4Å: Chain B: T.55 Ligand excluded by PLIP FMT.15: 5 residues within 4Å: Chain B: R.118, T.247, L.248, G.249, G.250 Ligand excluded by PLIP FMT.16: 4 residues within 4Å: Chain B: H.85, H.87, W.157, Q.161 Ligand excluded by PLIP FMT.17: 6 residues within 4Å: Chain A: S.210 Chain B: S.68, K.208, S.210, R.213 Ligands: FMT.8 Ligand excluded by PLIP

2 x ADN: ADENOSINE(Non-covalent)

ADN.9: 13 residues within 4Å: Chain A: L.31, G.32, E.33, G.34, V.39, A.57, V.105, E.106, Y.107, A.108, G.111, S.112, L.182 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.106, A:A.108, A:S.112 Water bridges: A:K.59, A:S.112, A:S.112, A:S.192 ADN.18: 13 residues within 4Å: Chain B: L.31, G.32, E.33, G.34, V.39, A.57, V.105, E.106, Y.107, A.108, G.111, S.112, L.182 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:E.106, B:A.108, B:S.112 Water bridges: B:K.59, B:S.112, B:S.112, B:S.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Plaza-Menacho, I. et al., Oncogenic RET kinase domain mutations perturb the autophosphorylation trajectory by enhancing substrate presentation in trans. Mol. Cell (2014)

Release Date

2014-03-05

Peptides

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTO-ONCOGENE TYROSINE-PROTEIN KINASE RECEPTOR RET