SMTL ID : 4cl1.1

The crystal structure of NS5A domain 1 from genotype 1a reveals new clues to the mechanism of action for dimeric HCV inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.9, C.27, C.29, C.50 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.27, A:C.29, A:C.50 ZN.3: 4 residues within 4Å: Chain B: C.9, C.27, C.29, C.50 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.27, B:C.29, B:C.50 ZN.4: 4 residues within 4Å: Chain C: C.9, C.27, C.29, C.50 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:C.27, C:C.29, C:C.50 ZN.5: 5 residues within 4Å: Chain D: C.9, C.27, C.29, C.50, R.51 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.9, D:C.27, D:C.29, D:C.50

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.11, R.51, S.55, T.57 Chain C: R.48 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.55 Salt bridges: A:R.11, A:R.51, C:R.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lambert, S.M. et al., The Crystal Structure of Ns5A Domain 1 from Genotype 1A Reveals New Clues to the Mechanism of Action for Dimeric Hcv Inhibitors. Protein Sci. (2014)

Release Date

2014-04-02

Peptides

NON-STRUCTURAL PROTEIN 5A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

NON-STRUCTURAL PROTEIN 5A