- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 6 residues within 4Å:- Chain A: P.121, L.122, D.123, A.124, E.178, T.302
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:P.121, A:T.302
- Hydrogen bonds: A:D.123, A:D.123, A:A.124, A:E.178
- Water bridges: A:E.178
ACT.8: 9 residues within 4Å:- Chain A: I.8, G.9, L.32, D.33, I.34, Y.65, S.78, C.102
- Ligands: CD.2
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.8, A:L.32, A:I.34
- Hydrogen bonds: A:I.34
ACT.18: 4 residues within 4Å:- Chain B: E.159, I.197, A.198, R.201
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:E.159, B:R.201
- Hydrogen bonds: B:A.198
- Water bridges: B:R.201
ACT.19: 7 residues within 4Å:- Chain B: W.20, K.24, L.26, A.234, Q.235, E.238
- Chain D: E.53
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: B:Q.235
- Salt bridges: B:K.24
- Hydrogen bonds: D:E.53
ACT.20: 8 residues within 4Å:- Chain B: I.8, G.9, L.32, D.33, I.34, Y.65, S.78
- Ligands: CD.13
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.8, B:L.32, B:I.34
- Hydrogen bonds: B:I.34, B:S.78
- Water bridges: B:S.78
ACT.28: 6 residues within 4Å:- Chain C: P.121, L.122, D.123, A.124, E.178, T.302
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:P.121, C:T.302
- Hydrogen bonds: C:D.123, C:A.124, C:E.178
ACT.29: 9 residues within 4Å:- Chain C: I.8, G.9, L.32, D.33, I.34, Y.65, S.78, C.102
- Ligands: CD.23
4 PLIP interactions:4 interactions with chain C- Hydrophobic interactions: C:I.8, C:L.32, C:I.34
- Hydrogen bonds: C:I.34
ACT.39: 4 residues within 4Å:- Chain D: E.159, I.197, A.198, R.201
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:E.159, D:R.201
- Hydrogen bonds: D:A.198
- Water bridges: D:R.201
ACT.40: 7 residues within 4Å:- Chain B: E.53
- Chain D: W.20, K.24, L.26, A.234, Q.235, E.238
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:Q.235
- Salt bridges: D:K.24
- Hydrogen bonds: B:E.53
ACT.41: 8 residues within 4Å:- Chain D: I.8, G.9, L.32, D.33, I.34, Y.65, S.78
- Ligands: CD.34
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.8, D:L.32, D:I.34
- Hydrogen bonds: D:I.34, D:S.78
- Water bridges: D:S.78
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.9: 8 residues within 4Å:- Chain B: F.12, L.220, T.222, G.223, S.224, Y.226
- Chain D: V.38
- Ligands: PEG.42
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:S.224, B:S.224
- Water bridges: B:Y.226, D:K.42, D:K.42
PEG.10: 3 residues within 4Å:- Chain A: R.100, E.131, V.132
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.100, A:R.100, A:V.132
- Water bridges: A:R.100
PEG.11: 4 residues within 4Å:- Chain A: R.82, G.214, V.217, N.218
1 PLIP interactions:1 interactions with chain A- Water bridges: A:G.214
PEG.21: 7 residues within 4Å:- Chain B: A.10, G.11, D.33, V.38, K.42
- Ligands: CD.13, PEG.30
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.42
- Water bridges: B:G.11, B:D.33, B:K.42
PEG.30: 8 residues within 4Å:- Chain B: V.38
- Chain D: F.12, L.220, T.222, G.223, S.224, Y.226
- Ligands: PEG.21
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:S.224, D:S.224
- Water bridges: D:T.222, B:K.42, B:K.42
PEG.31: 3 residues within 4Å:- Chain C: R.100, E.131, V.132
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.100, C:R.100, C:V.132
- Water bridges: C:R.100
PEG.32: 4 residues within 4Å:- Chain C: R.82, G.214, V.217, N.218
1 PLIP interactions:1 interactions with chain C- Water bridges: C:G.214
PEG.42: 7 residues within 4Å:- Chain D: A.10, G.11, D.33, V.38, K.42
- Ligands: PEG.9, CD.34
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:K.42
- Water bridges: D:G.11, D:D.33, D:K.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Talon, R. et al., An Experimental Point of View on Hydration/Solvation in Halophilic Proteins. Front.Microbiol. (2014)
- Release Date
- 2014-02-05
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
AD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 22 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 8 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Talon, R. et al., An Experimental Point of View on Hydration/Solvation in Halophilic Proteins. Front.Microbiol. (2014)
- Release Date
- 2014-02-05
- Peptides
- MALATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
DC
AD
D