SMTL ID : 4cmw.1

Crystal structure of Rv3378c

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: L.119, F.120, Y.124, D.142, T.145, Y.194, G.195 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.120, A:Y.124, A:D.142, A:T.145, A:Y.194 EDO.2: 6 residues within 4Å: Chain A: G.221, S.224, R.251, H.252 Chain B: R.209, S.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.221, A:R.251, A:R.251 EDO.5: 6 residues within 4Å: Chain A: S.220, G.221 Chain B: S.80, N.163, F.213, D.214 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:G.221, B:S.80, B:S.80 Water bridges: A:S.219, B:N.163, B:D.214

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 8 residues within 4Å: Chain A: D.34, R.38, F.207, G.208, R.209, I.291, W.292 Ligands: CIT.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.34, A:R.38, A:R.38, A:R.209, A:R.209 PEG.6: 9 residues within 4Å: Chain A: T.212, F.213, F.215, S.219 Chain B: F.213, D.214, F.215, P.216, S.219 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:T.212, A:S.219, B:D.214, B:F.215, B:S.219 Water bridges: A:D.214, A:S.219, B:N.163

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 9 residues within 4Å: Chain A: G.35, T.36, R.37, R.38, R.209 Chain B: K.256, P.257, Y.259 Ligands: PEG.3 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:Y.259, A:R.37, A:R.38, A:R.38 Salt bridges: B:K.256, A:R.37, A:R.38, A:R.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Layre, E. et al., Molecular Profiling of Mycobacterium Tuberculosis Identifies Tuberculosinyl Nucleoside Products of the Virulence-Associated Enzyme Rv3378C. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-02-19

Peptides

DITERPENE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DITERPENE SYNTHASE

Related Entries With Identical Sequence