SMTL ID : 4cmy.1

Chlorobium tepidum Ferritin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-23-1-mer

Ligands

48 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.17, E.50, H.53, Q.127 Ligands: FE.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.17, A:E.50, A:H.53, H2O.1 FE.2: 5 residues within 4Å: Chain A: E.50, E.94, Q.127, E.130 Ligands: FE.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.50, A:E.94, A:E.94, A:E.130 FE.3: 5 residues within 4Å: Chain B: E.50, E.94, Q.127, E.130 Ligands: FE.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.50, B:E.94, B:E.94, B:E.130 FE.4: 5 residues within 4Å: Chain B: E.17, E.50, H.53, Q.127 Ligands: FE.3 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.17, B:E.50, B:H.53, H2O.2 FE.5: 5 residues within 4Å: Chain C: E.17, E.50, H.53, Q.127 Ligands: FE.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.17, C:E.50, C:H.53, H2O.3 FE.6: 5 residues within 4Å: Chain C: E.50, E.94, Q.127, E.130 Ligands: FE.5 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.50, C:E.94, C:E.94, C:E.130 FE.7: 5 residues within 4Å: Chain D: E.17, E.50, H.53, Q.127 Ligands: FE.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.17, D:E.50, D:H.53, H2O.4 FE.8: 5 residues within 4Å: Chain D: E.50, E.94, Q.127, E.130 Ligands: FE.7 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.50, D:E.94, D:E.94, D:E.130 FE.9: 5 residues within 4Å: Chain E: E.50, E.94, Q.127, E.130 Ligands: FE.10 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:E.50, E:E.94, E:E.94, E:E.130 FE.10: 5 residues within 4Å: Chain E: E.17, E.50, H.53, Q.127 Ligands: FE.9 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.17, E:E.50, E:H.53, H2O.4 FE.11: 5 residues within 4Å: Chain F: E.17, E.50, H.53, Q.127 Ligands: FE.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.17, F:E.50, F:H.53 FE.12: 5 residues within 4Å: Chain F: E.50, E.94, Q.127, E.130 Ligands: FE.11 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.50, F:E.94, F:E.94, F:E.130 FE.13: 5 residues within 4Å: Chain G: E.17, E.50, H.53, Q.127 Ligands: FE.14 4 PLIP interactions: 3 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.17, G:E.50, G:H.53, H2O.5 FE.14: 5 residues within 4Å: Chain G: E.50, E.94, Q.127, E.130 Ligands: FE.13 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:E.50, G:E.94, G:E.94, G:E.130 FE.15: 5 residues within 4Å: Chain H: E.17, E.50, H.53, Q.127 Ligands: FE.16 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.17, H:E.50, H:H.53 FE.16: 6 residues within 4Å: Chain H: E.50, H.53, E.94, Q.127, E.130 Ligands: FE.15 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:E.50, H:E.94, H:E.94, H:E.130 FE.17: 5 residues within 4Å: Chain I: E.50, E.94, Q.127, E.130 Ligands: FE.18 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:E.50, I:E.94, I:E.94, I:E.130 FE.18: 5 residues within 4Å: Chain I: E.17, E.50, H.53, Q.127 Ligands: FE.17 4 PLIP interactions: 3 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.17, I:E.50, I:H.53, H2O.6 FE.19: 5 residues within 4Å: Chain J: E.50, E.94, Q.127, E.130 Ligands: FE.20 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:E.50, J:E.94, J:E.94, J:E.130 FE.20: 5 residues within 4Å: Chain J: E.17, E.50, H.53, Q.127 Ligands: FE.19 4 PLIP interactions: 3 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.17, J:E.50, J:H.53, H2O.7 FE.21: 5 residues within 4Å: Chain K: E.50, E.94, Q.127, E.130 Ligands: FE.22 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:E.50, K:E.94, K:E.94, K:E.130 FE.22: 5 residues within 4Å: Chain K: E.17, E.50, H.53, Q.127 Ligands: FE.21 4 PLIP interactions: 3 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.17, K:E.50, K:H.53, H2O.8 FE.23: 6 residues within 4Å: Chain L: E.50, H.53, E.94, Q.127, E.130 Ligands: FE.24 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:E.50, L:E.94, L:E.94, L:E.130 FE.24: 5 residues within 4Å: Chain L: E.17, E.50, H.53, Q.127 Ligands: FE.23 4 PLIP interactions: 3 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.17, L:E.50, L:H.53, H2O.10 FE.25: 5 residues within 4Å: Chain M: E.50, E.94, Q.127, E.130 Ligands: FE.26 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:E.50, M:E.94, M:E.94, M:E.130 FE.26: 5 residues within 4Å: Chain M: E.17, E.50, H.53, Q.127 Ligands: FE.25 4 PLIP interactions: 3 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.17, M:E.50, M:H.53, H2O.10 FE.27: 5 residues within 4Å: Chain N: E.17, E.50, H.53, Q.127 Ligands: FE.28 4 PLIP interactions: 3 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.17, N:E.50, N:H.53, H2O.11 FE.28: 5 residues within 4Å: Chain N: E.50, E.94, Q.127, E.130 Ligands: FE.27 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:E.50, N:E.94, N:E.94, N:E.130 FE.29: 5 residues within 4Å: Chain O: E.50, E.94, Q.127, E.130 Ligands: FE.30 4 PLIP interactions: 4 interactions with chain O Metal complexes: O:E.50, O:E.94, O:E.94, O:E.130 FE.30: 5 residues within 4Å: Chain O: E.17, E.50, H.53, Q.127 Ligands: FE.29 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:E.17, O:E.50, O:H.53 FE.31: 5 residues within 4Å: Chain P: E.17, E.50, H.53, Q.127 Ligands: FE.32 4 PLIP interactions: 3 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.17, P:E.50, P:H.53, H2O.12 FE.32: 5 residues within 4Å: Chain P: E.50, E.94, Q.127, E.130 Ligands: FE.31 4 PLIP interactions: 4 interactions with chain P Metal complexes: P:E.50, P:E.94, P:E.94, P:E.130 FE.33: 5 residues within 4Å: Chain Q: E.50, E.94, Q.127, E.130 Ligands: FE.34 4 PLIP interactions: 4 interactions with chain Q Metal complexes: Q:E.50, Q:E.94, Q:E.94, Q:E.130 FE.34: 5 residues within 4Å: Chain Q: E.17, E.50, H.53, Q.127 Ligands: FE.33 4 PLIP interactions: 3 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:E.17, Q:E.50, Q:H.53, H2O.12 FE.35: 5 residues within 4Å: Chain R: E.17, E.50, H.53, Q.127 Ligands: FE.36 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:E.17, R:E.50, R:H.53 FE.36: 5 residues within 4Å: Chain R: E.50, E.94, Q.127, E.130 Ligands: FE.35 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:E.50, R:E.94, R:E.94, R:E.130 FE.37: 5 residues within 4Å: Chain S: E.50, E.94, Q.127, E.130 Ligands: FE.38 4 PLIP interactions: 4 interactions with chain S Metal complexes: S:E.50, S:E.94, S:E.94, S:E.130 FE.38: 5 residues within 4Å: Chain S: E.17, E.50, H.53, Q.127 Ligands: FE.37 4 PLIP interactions: 3 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:E.17, S:E.50, S:H.53, H2O.13 FE.39: 5 residues within 4Å: Chain T: E.17, E.50, H.53, Q.127 Ligands: FE.40 4 PLIP interactions: 3 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.17, T:E.50, T:H.53, H2O.14 FE.40: 5 residues within 4Å: Chain T: E.50, E.94, Q.127, E.130 Ligands: FE.39 4 PLIP interactions: 4 interactions with chain T Metal complexes: T:E.50, T:E.94, T:E.94, T:E.130 FE.41: 5 residues within 4Å: Chain U: E.17, E.50, H.53, Q.127 Ligands: FE.42 4 PLIP interactions: 3 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.17, U:E.50, U:H.53, H2O.15 FE.42: 5 residues within 4Å: Chain U: E.50, E.94, Q.127, E.130 Ligands: FE.41 4 PLIP interactions: 4 interactions with chain U Metal complexes: U:E.50, U:E.94, U:E.94, U:E.130 FE.43: 5 residues within 4Å: Chain V: E.50, E.94, Q.127, E.130 Ligands: FE.44 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:E.50, V:E.94, V:E.94, V:E.130 FE.44: 5 residues within 4Å: Chain V: E.17, E.50, H.53, Q.127 Ligands: FE.43 4 PLIP interactions: 3 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.17, V:E.50, V:H.53, H2O.16 FE.45: 5 residues within 4Å: Chain W: E.17, E.50, H.53, Q.127 Ligands: FE.46 4 PLIP interactions: 3 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.17, W:E.50, W:H.53, H2O.17 FE.46: 6 residues within 4Å: Chain W: E.50, H.53, E.94, Q.127, E.130 Ligands: FE.45 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:E.50, W:E.94, W:E.94, W:E.130 FE.47: 5 residues within 4Å: Chain X: E.17, E.50, H.53, Q.127 Ligands: FE.48 4 PLIP interactions: 3 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.17, X:E.50, X:H.53, H2O.18 FE.48: 5 residues within 4Å: Chain X: E.50, E.94, Q.127, E.130 Ligands: FE.47 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:E.50, X:E.94, X:E.94, X:E.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arenas, M. et al., The Crystal Structure of Ferritin from Chlorobium Tepidum Reveals a New Conformation of the 4-Fold Channel for This Protein Family. Biochimie (2014)

Release Date

2014-11-26

Peptides

FERRITIN: ABCDEFGHIJKLMNOPQRSTUWX
FERRITIN: V

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

W
W

X
X

V
V

FERRITIN

FERRITIN