SMTL ID : 4cnc.2 (1 other biounit)

Crystal structure of human 5T4 (Wnt-activated inhibitory factor 1, Trophoblast glycoprotein)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: F.41, T.43, N.68, S.70, Q.90, D.92, I.123 Ligands: GOL.7 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: H.126, S.163, H.165, N.187 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.126, A:S.163, A:H.165, A:N.187 Water bridges: A:H.165 NAG.3: 6 residues within 4Å: Chain A: L.174, A.175, P.178, S.197, R.199, N.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.175, A:S.197, A:N.200

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 4 residues within 4Å: Chain A: Q.5, C.6, E.11, C.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.6, A:E.11, A:C.12 PEG.5: 4 residues within 4Å: Chain A: F.82, H.84, L.85, P.86 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.82, A:H.84, A:L.85 PEG.6: 6 residues within 4Å: Chain A: A.65, R.89, Q.90, V.120, E.121 Ligands: SO4.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.89

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 6 residues within 4Å: Chain A: D.92, S.94, I.123, N.125 Ligands: NAG-NAG.1, NAG-NAG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.92, A:S.94, A:H.95, A:N.125 GOL.8: 2 residues within 4Å: Chain A: D.4, Q.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.4, A:Q.5

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 3 residues within 4Å: Chain A: S.13, E.14, A.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.14, A:A.15 SO4.10: 6 residues within 4Å: Chain A: R.158, H.182, S.206, H.208, R.232, F.234 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.206, A:S.206 Salt bridges: A:R.158, A:H.182, A:H.208, A:R.232 SO4.11: 3 residues within 4Å: Chain A: P.51, A.52, R.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.52 Water bridges: A:A.79 Salt bridges: A:R.78 SO4.12: 3 residues within 4Å: Chain A: S.197, F.198, R.199 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.198, A:R.199 Salt bridges: A:R.199 SO4.13: 5 residues within 4Å: Chain A: V.120, R.157, R.158, H.182 Ligands: PEG.6 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.157, A:R.158, A:H.182 SO4.14: 1 residues within 4Å: Chain A: H.245 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.248 Salt bridges: A:H.245

1 x NA: SODIUM ION(Non-functional Binders)

NA.15: 2 residues within 4Å: Chain A: T.251, K.254 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.251 Water bridges: A:T.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Insights Into the Inhibition of Wnt Signaling by Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1. Structure (2014)

Release Date

2014-02-26

Peptides

TROPHOBLAST GLYCOPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

TROPHOBLAST GLYCOPROTEIN

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