SMTL ID : 4cnk.2 (1 other biounit)

L-Aminoacetone oxidase from Streptococcus oligofermentans belongs to a new 3-domain family of bacterial flavoproteins

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 35 residues within 4Å: Chain A: I.9, G.10, G.11, G.12, P.13, A.14, E.33, K.34, N.35, K.41, T.45, N.51, T.132, E.133, I.134, T.161, T.162, G.163, Y.167, T.170, G.171, S.172, F.175, F.333, G.361, E.362, H.369, T.370, G.371, G.372, F.373, N.374, I.375, A.378 Ligands: MEU.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:K.41, A:Y.167, A:Y.167, A:F.333 Hydrogen bonds: A:G.11, A:A.14, A:K.34, A:K.34, A:N.35, A:I.134, A:I.134, A:T.170, A:E.362, A:G.371, A:G.372, A:N.374, A:N.374, A:I.375 Water bridges: A:G.12, A:G.15, A:K.41, A:K.41, A:E.133, A:E.133, A:G.163, A:G.164, A:T.170, A:S.172, A:T.173, A:F.333, A:E.362 Salt bridges: A:K.41

2 x MEU: O-METHYL-GLYCINE(Non-covalent)

MEU.2: 7 residues within 4Å: Chain A: T.45, G.46, G.236, L.240, T.370 Ligands: FAD.1, MEU.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.46, A:G.47 Water bridges: A:R.102, A:R.102 MEU.3: 5 residues within 4Å: Chain A: G.46, G.47, R.49, R.102 Ligands: MEU.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.46, A:R.49 Salt bridges: A:R.49, A:R.102

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: N.35, K.36, R.37, K.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.36, A:R.37 Salt bridges: A:R.37, A:K.40 SO4.5: 3 residues within 4Å: Chain A: K.275, S.276, N.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.276 Salt bridges: A:K.275 SO4.6: 2 residues within 4Å: Chain A: P.286, E.287 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.287 SO4.7: 3 residues within 4Å: Chain A: S.261, Q.262, K.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.262 Water bridges: A:Q.263 SO4.8: 2 residues within 4Å: Chain A: R.273, K.302 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.273, A:K.302

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain A: F.201, P.202, H.203, K.204 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.204, A:K.204, A:K.204 Water bridges: A:T.199, A:F.201 GOL.10: 4 residues within 4Å: Chain A: E.270, E.271, R.273, E.274 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.270, A:R.273 GOL.11: 3 residues within 4Å: Chain A: P.202, A.205, Q.295 No protein-ligand interaction detected (PLIP) GOL.12: 6 residues within 4Å: Chain A: V.135, S.136, V.137, D.178, I.179, H.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.137, A:V.137 GOL.13: 4 residues within 4Å: Chain A: E.191, A.192, S.328, L.329 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.192, A:L.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Molla, G. et al., Aminoacetone Oxidase from Streptococcus Oligofermentas Belongs to a New Three-Domain Family of Bacterial Flavoproteins. Biochem.J. (2014)

Release Date

2014-10-15

Peptides

L-AMINO ACID OXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

L-AMINO ACID OXIDASE

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