SMTL ID : 4cns.1 (4 other biounits)

Crystal structure of truncated human CRMP-4

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: E.220, A.223, S.249 Chain B: F.227, K.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.249 Water bridges: A:E.220 EDO.2: 6 residues within 4Å: Chain A: F.227, I.230, Q.256, A.257, K.260 Chain B: E.220 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.260 Water bridges: A:Q.256, A:A.257, A:N.262 EDO.3: 9 residues within 4Å: Chain A: A.290, T.325, F.326, K.331, G.344, T.345, N.346, A.419, Y.421 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.326, A:K.331, A:K.331, A:N.346, A:Y.421

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: A.159, Y.160, I.195, R.217 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: A.159, Y.160, I.195, R.217 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain C: A.159, Y.160, I.195, R.217 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain D: A.159, Y.160, I.195, R.217 Ligand excluded by PLIP

5 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: D.118, G.454, G.456 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.118, A:G.454, A:G.456 MG.6: 4 residues within 4Å: Chain A: K.244, I.269, T.293, A.322 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.293, H2O.4, H2O.5 MG.8: 3 residues within 4Å: Chain B: D.118, G.454, G.456 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.118, B:G.454, B:G.456, H2O.9 MG.11: 3 residues within 4Å: Chain C: D.118, G.454, G.456 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.118, C:G.454, C:G.456 MG.13: 3 residues within 4Å: Chain D: D.118, G.454, G.456 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:D.118, D:G.454, D:G.456

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 9 residues within 4Å: Chain C: F.227, I.230, S.234, L.253, Q.256, A.257, K.260, N.262 Chain D: E.220 7 PLIP interactions: 1 interactions with chain D, 6 interactions with chain C Water bridges: D:E.220 Hydrogen bonds: C:S.234, C:S.234, C:Q.256, C:A.257, C:K.260, C:N.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ponnusamy, R. et al., Crystal Structure of Human Crmp-4: Correction of Intensities for Lattice-Translocation Disorder. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-06-18

Peptides

DIHYDROPYRIMIDINASE-LIKE 3: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DIHYDROPYRIMIDINASE-LIKE 3

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