SMTL ID : 4co8.1

Structure of the DNA binding ETS domain of human ETV4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: A.5, L.6, Q.7, K.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.6, A:K.50 Water bridges: A:R.52 EDO.2: 5 residues within 4Å: Chain A: Q.7, W.9, S.94, L.95, P.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.9 EDO.3: 4 residues within 4Å: Chain A: L.16, D.17, W.27 Chain B: E.90 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.90, B:E.90 Water bridges: A:L.16 EDO.4: 4 residues within 4Å: Chain B: A.5, L.6, Q.7, K.50 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.6, B:K.50 Water bridges: B:R.52 EDO.5: 5 residues within 4Å: Chain B: Q.7, W.9, S.94, L.95, P.98 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:W.9 EDO.6: 4 residues within 4Å: Chain A: E.90 Chain B: L.16, D.17, W.27 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:E.90 Water bridges: B:L.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cooper, C.D.O. et al., Structures of the Ets Domains of Transcription Factors Etv1, Etv4, Etv5 and Fev: Determinants of DNA Binding and Redox Regulation by Disulfide Bond Formation. J.Biol.Chem. (2015)

Release Date

2014-02-05

Peptides

ETS TRANSLOCATION VARIANT 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ETS TRANSLOCATION VARIANT 4