- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x CD: CADMIUM ION(Non-covalent)
CD.2: 6 residues within 4Å:- Chain A: H.50, H.54, D.56, E.174
- Ligands: ZN.1, GOL.6
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.50, A:H.54, A:D.56, A:E.174
CD.12: 6 residues within 4Å:- Chain B: H.50, H.54, D.56, E.174
- Ligands: ZN.11, GOL.16
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.50, B:H.54, B:D.56, B:E.174
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 1 residues within 4Å:- Chain A: H.139
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:H.139, H2O.8, H2O.9, H2O.9, H2O.11
MG.4: 2 residues within 4Å:- Chain A: D.62, D.64
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.62, A:D.64, H2O.6, H2O.6, H2O.6
MG.13: 2 residues within 4Å:- Chain B: D.62, D.64
6 PLIP interactions:2 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.62, B:D.64, H2O.15, H2O.15, H2O.15, H2O.16
MG.14: 1 residues within 4Å:- Chain B: H.139
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:H.139, H2O.19, H2O.19, H2O.19, H2O.21
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: W.20, D.23, H.50, H.60
- Chain B: W.32, V.40, V.42
- Ligands: GOL.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.23, A:H.60
- Water bridges: A:W.20
GOL.6: 13 residues within 4Å:- Chain A: W.20, H.50, H.54, D.56, H.60, P.149, S.150, M.159, H.162, E.174
- Ligands: ZN.1, CD.2, GOL.5
No protein-ligand interaction detected (PLIP)GOL.7: 9 residues within 4Å:- Chain A: P.11, G.52, Y.113, A.116, A.117, D.147, T.148, G.175, I.176
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:A.117, A:A.117, A:D.147
- Water bridges: A:G.52, A:G.52, A:Y.113
GOL.15: 8 residues within 4Å:- Chain A: W.32, V.40, V.42
- Chain B: W.20, D.23, H.50, H.60
- Ligands: GOL.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.23
- Water bridges: B:S.48
GOL.16: 13 residues within 4Å:- Chain B: W.20, H.50, H.54, D.56, H.60, P.149, S.150, M.159, H.162, E.174
- Ligands: ZN.11, CD.12, GOL.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:H.162
- Water bridges: B:H.50
GOL.17: 9 residues within 4Å:- Chain B: P.11, G.52, Y.113, A.116, A.117, D.147, T.148, G.175, I.176
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:A.117, B:G.175
- Water bridges: B:G.52, B:G.52, B:Y.113, B:Y.113
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 5 residues within 4Å:- Chain A: Y.113, R.115, A.116, A.117, D.122
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.115, A:D.122
EDO.9: 2 residues within 4Å:- Chain A: R.81, D.185
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.185
- Water bridges: A:R.81, A:R.81
EDO.10: 5 residues within 4Å:- Chain A: I.86, G.87, T.112, Y.113, A.114
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.114
- Water bridges: A:R.115
EDO.18: 2 residues within 4Å:- Chain B: P.183, G.184
1 PLIP interactions:1 interactions with chain B- Water bridges: B:D.185
EDO.19: 3 residues within 4Å:- Chain B: Y.113, R.115, A.116
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.118
EDO.20: 1 residues within 4Å:- Chain B: I.86
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.86
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz-Saez, L. et al., Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile. Biochem.J. (2014)
- Release Date
- 2014-04-02
- Peptides
- KYNURENINE FORMAMIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x CD: CADMIUM ION(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz-Saez, L. et al., Structure of Bacterial Kynurenine Formamidase Reveals a Crowded Binuclear-Zinc Catalytic Site Primed to Generate a Potent Nucleophile. Biochem.J. (2014)
- Release Date
- 2014-04-02
- Peptides
- KYNURENINE FORMAMIDASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B