SMTL ID : 4cpe.1

Wild-type streptavidin in complex with love-hate ligand 1 (LH1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

homo-tetramer

Ligands

4 x LUV: (3aS,4S,6aR)-2-oxo-hexahydro-1H-thieno[3,4- d]imidazolidin-4-yl]-N-{2-[(2,6- diphenylphenyl)formamido]ethyl}pentanamide(Non-covalent)

LUV.1: 20 residues within 4Å: Chain A: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 Chain D: W.108, K.109 17 PLIP interactions: 15 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:W.67, A:W.67, A:W.67, A:L.98, A:L.112, D:W.108, D:K.109 Hydrogen bonds: A:N.11, A:S.15, A:S.33, A:N.37, A:S.76, A:S.76, A:S.100, A:S.100, A:D.116 Water bridges: A:Q.12 LUV.2: 22 residues within 4Å: Chain B: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, H.75, S.76, T.78, W.80, W.96, L.98, S.100, G.101, D.116 Chain C: W.108, K.109 18 PLIP interactions: 2 interactions with chain C, 16 interactions with chain B Hydrophobic interactions: C:W.108, C:K.109, B:A.38, B:W.67, B:W.67, B:W.67, B:L.98 Hydrogen bonds: B:N.11, B:S.15, B:Y.31, B:S.33, B:N.37, B:N.37, B:S.76, B:S.76, B:S.100, B:S.100, B:D.116 LUV.3: 20 residues within 4Å: Chain B: W.108, K.109 Chain C: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, W.67, A.74, S.76, T.78, W.80, W.96, L.98, S.100, L.112, D.116 18 PLIP interactions: 16 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:W.67, C:W.67, C:W.67, C:L.98, C:L.112, B:W.108, B:K.109 Hydrogen bonds: C:N.11, C:S.15, C:Y.31, C:S.33, C:N.37, C:S.76, C:S.76, C:S.100, C:S.100, C:D.116 Water bridges: C:Q.12 LUV.4: 22 residues within 4Å: Chain A: W.108, K.109 Chain D: N.11, L.13, S.15, Y.31, S.33, V.35, G.36, N.37, A.38, W.67, A.74, H.75, S.76, T.78, W.80, W.96, L.98, S.100, G.101, D.116 17 PLIP interactions: 15 interactions with chain D, 2 interactions with chain A Hydrophobic interactions: D:A.38, D:W.67, D:W.67, D:W.67, D:L.98, A:W.108, A:K.109 Hydrogen bonds: D:N.11, D:S.15, D:S.33, D:N.37, D:N.37, D:S.76, D:S.76, D:S.100, D:S.100, D:D.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairhead, M. et al., Love-Hate Ligands for High Resolution Analysis of Strain in Ultra-Stable Protein/Small Molecule Interaction. Bioorg.Med.Chem. (2014)

Release Date

2014-08-06

Peptides

STREPTAVIDIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

STREPTAVIDIN

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