SMTL ID : 4cpl.1

Structure of the Neuraminidase from the B/Brisbane/60/2008 virus.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 3 residues within 4Å: Chain A: Y.82, P.83, N.284 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.82 NAG-NAG-BMA.7: 3 residues within 4Å: Chain C: Y.82, P.83, N.284 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:Y.82

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 1 residues within 4Å: Chain A: N.144 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: Y.82, P.83, N.284 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Y.82 NAG-NAG.8: 1 residues within 4Å: Chain C: N.144 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 3 residues within 4Å: Chain D: Y.82, P.83, N.284 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:Y.82

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: D.293, T.297, D.324, G.344, G.346 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.293, A:T.297, A:D.324, A:G.344, A:G.346, H2O.12 CA.5: 5 residues within 4Å: Chain B: D.293, T.297, D.324, G.344, G.346 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.293, B:T.297, B:D.324, B:G.344, B:G.346, H2O.26 CA.10: 5 residues within 4Å: Chain C: D.293, T.297, D.324, G.344, G.346 6 PLIP interactions: 5 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.293, C:T.297, C:D.324, C:G.344, C:G.346, H2O.43 CA.11: 5 residues within 4Å: Chain D: D.293, T.297, D.324, G.344, G.346 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.293, D:T.297, D:D.324, D:G.344, D:G.346, H2O.56

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 1 residues within 4Å: Chain B: N.144 No protein-ligand interaction detected (PLIP) NAG.12: 1 residues within 4Å: Chain D: N.144 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Escuret, V. et al., A Novel I221 L Substitution in Neuraminidase Confers High Level Resistance to Oseltamivir in Influenza B Viruses. J.Infect.Dis. (2014)

Release Date

2014-05-14

Peptides

NEURAMINIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

NEURAMINIDASE

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