- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.5: 5 residues within 4Å:- Chain A: D.293, T.297, D.324, G.344, G.346
6 PLIP interactions:5 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.293, A:T.297, A:D.324, A:G.344, A:G.346, H2O.9
CA.8: 5 residues within 4Å:- Chain B: D.293, T.297, D.324, G.344, G.346
6 PLIP interactions:5 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.293, B:T.297, B:D.324, B:G.344, B:G.346, H2O.20
CA.11: 5 residues within 4Å:- Chain C: D.293, T.297, D.324, G.344, G.346
6 PLIP interactions:5 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.293, C:T.297, C:D.324, C:G.344, C:G.346, H2O.29
CA.14: 5 residues within 4Å:- Chain D: D.293, T.297, D.324, G.344, G.346
6 PLIP interactions:5 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.293, D:T.297, D:D.324, D:G.344, D:G.346, H2O.36
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.6: 1 residues within 4Å:- Chain A: N.144
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.144
NAG.9: 1 residues within 4Å:- Chain B: N.144
No protein-ligand interaction detected (PLIP)NAG.12: 1 residues within 4Å:- Chain C: N.144
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:N.144
NAG.15: 2 residues within 4Å:- Chain D: N.144, G.145
No protein-ligand interaction detected (PLIP)- 4 x ZMR: ZANAMIVIR(Non-covalent)
ZMR.7: 17 residues within 4Å:- Chain A: R.116, E.117, L.132, D.149, R.150, R.154, W.177, L.221, R.223, E.226, A.245, E.275, E.276, R.292, N.294, R.374, Y.409
18 PLIP interactions:18 interactions with chain A- Hydrophobic interactions: A:W.177, A:L.221
- Hydrogen bonds: A:R.150, A:W.177, A:W.177, A:R.223, A:E.276, A:R.292, A:R.292
- Water bridges: A:R.154, A:R.154, A:E.276
- Salt bridges: A:R.116, A:E.117, A:D.149, A:E.226, A:R.292, A:R.374
ZMR.10: 16 residues within 4Å:- Chain B: R.116, E.117, D.149, R.150, R.154, W.177, L.221, R.223, E.226, A.245, E.275, E.276, R.292, N.294, R.374, Y.409
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:W.177, B:L.221, B:R.223
- Hydrogen bonds: B:D.149, B:R.150, B:W.177, B:R.223, B:E.276, B:R.292, B:R.292
- Water bridges: B:R.116, B:R.154, B:E.226, B:E.276, B:E.276
- Salt bridges: B:R.116, B:E.117, B:D.149, B:E.226, B:R.292, B:R.374
ZMR.13: 15 residues within 4Å:- Chain C: R.116, E.117, D.149, R.150, R.154, W.177, R.223, E.226, A.245, E.275, E.276, R.292, N.294, R.374, Y.409
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:W.177
- Hydrogen bonds: C:R.150, C:W.177, C:W.177, C:R.223, C:E.276, C:R.292
- Water bridges: C:R.154, C:E.226, C:E.276, C:E.276
- Salt bridges: C:R.116, C:E.117, C:D.149, C:E.226, C:R.292, C:R.374
ZMR.16: 16 residues within 4Å:- Chain D: R.116, E.117, D.149, R.150, R.154, W.177, L.221, R.223, E.226, A.245, E.275, E.276, R.292, N.294, R.374, Y.409
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:W.177, D:L.221, D:R.223
- Hydrogen bonds: D:R.150, D:W.177, D:W.177, D:R.223, D:E.276, D:R.292, D:R.292
- Water bridges: D:R.116, D:R.154, D:E.226, D:E.226, D:E.276, D:E.276
- Salt bridges: D:R.116, D:E.117, D:D.149, D:E.226, D:R.292, D:R.374
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Escuret, V. et al., A Novel I221 L Substitution in Neuraminidase Confers High Level Resistance to Oseltamivir in Influenza B Viruses. J.Infect.Dis. (2014)
- Release Date
- 2014-05-14
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 4 x ZMR: ZANAMIVIR(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Escuret, V. et al., A Novel I221 L Substitution in Neuraminidase Confers High Level Resistance to Oseltamivir in Influenza B Viruses. J.Infect.Dis. (2014)
- Release Date
- 2014-05-14
- Peptides
- NEURAMINIDASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D