SMTL ID : 4cq7.1

The crystal structure of the allene oxide cyclase 2 from Arabidopsis thaliana with bound product - OPDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

2 x WHW: 9S,13R-12-OXOPHYTODIENOIC ACID(Non-covalent)

WHW.1: 18 residues within 4Å: Chain A: E.23, I.24, N.25, S.31, P.32, I.34, F.43, V.49, F.51, N.53, C.71, F.85, Y.105, Y.136, P.137, T.138, K.139, L.140 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.23, A:F.51, A:P.137, A:L.140 Hydrogen bonds: A:N.53 WHW.2: 18 residues within 4Å: Chain B: E.23, I.24, N.25, S.31, P.32, I.34, F.43, V.49, F.51, N.53, C.71, F.85, Y.105, Y.136, P.137, T.138, K.139, L.140 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:E.23, B:N.25, B:I.34, B:F.51, B:Y.105, B:L.140 Hydrogen bonds: B:N.53 Water bridges: B:Y.105

1 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 13 residues within 4Å: Chain C: E.23, P.32, V.49, F.51, N.53, T.67, C.71, Y.89, Y.105, L.131, P.137, L.140, Y.142 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Y.105 Hydrogen bonds: C:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Terlecka, B.A. et al., The Ligand-Bound Structures of the Aoc2 from A. Thaliana and the Implications for the Catalytic Mechanism. To be Published

Release Date

2015-03-04

Peptides

ALLENE OXIDE CYCLASE 2, CHLOROPLASTIC: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ALLENE OXIDE CYCLASE 2, CHLOROPLASTIC

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