SMTL ID : 4cqv.1

Crystal structure of H5 (tyTy) Del133/Ile155Thr Mutant Haemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-3-3-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.13 No protein-ligand interaction detected (PLIP) NAG.2: 1 residues within 4Å: Chain A: N.25 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: N.166, N.237, A.239 Chain E: S.218 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.239 Hydrogen bonds: A:N.237 NAG.6: 1 residues within 4Å: Chain C: N.13 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.13 NAG.7: 1 residues within 4Å: Chain C: N.25 No protein-ligand interaction detected (PLIP) NAG.8: 5 residues within 4Å: Chain A: S.218 Chain C: N.166, N.237, D.238, A.239 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:A.239 Hydrogen bonds: C:N.237 NAG.11: 2 residues within 4Å: Chain E: Q.17, N.25 No protein-ligand interaction detected (PLIP) NAG.12: 5 residues within 4Å: Chain C: S.218 Chain E: N.166, T.168, N.237, A.239 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:A.239 Hydrogen bonds: E:N.237, E:N.237

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: S.133, S.134, S.142, Q.223 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.134, A:S.134, A:S.142, A:Q.223 PO4.5: 5 residues within 4Å: Chain A: S.123, W.124, S.125, D.126, H.127 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.125, A:D.126, A:D.126, A:H.127 Water bridges: A:T.160, A:K.162 Salt bridges: A:H.127 PO4.9: 5 residues within 4Å: Chain C: V.132, S.133, S.134, S.142, Q.223 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.134, C:S.142, C:Q.223 PO4.10: 7 residues within 4Å: Chain C: K.104, H.105, S.108, I.265 Chain D: G.67, R.68, E.69 8 PLIP interactions: 5 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:R.68, D:E.69, D:E.69, C:S.108, C:S.108, C:I.265 Water bridges: D:E.69, D:E.69 PO4.13: 3 residues within 4Å: Chain E: S.133, S.134, Q.223 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.134, E:Q.223 PO4.14: 6 residues within 4Å: Chain E: S.123, W.124, S.125, D.126, H.127, R.163 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.123, E:S.125, E:D.126, E:D.126, E:D.126, E:D.126, E:H.127, E:R.163 Salt bridges: E:H.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, X. et al., Enhanced Human Receptor Binding by H5 Haemagglutinins. Virology (2014)

Release Date

2014-05-28

Peptides

HAEMAGGLUTININ HA1: ACE
HAEMAGGLUTININ HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

HAEMAGGLUTININ HA1

HAEMAGGLUTININ HA2

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