SMTL ID : 4cr8.1 (3 other biounits)

Crystal structure of the N-acetyl-D-mannosamine dehydrogenase with NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 15 residues within 4Å: Chain A: G.22, A.24, G.25, G.26, I.27, D.46, L.47, R.50, C.66, D.67, L.68, G.95, A.96, V.118, V.201 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.26, A:I.27, A:L.47, A:R.50, A:R.50, A:D.67, A:L.68, A:A.69, A:A.96 Water bridges: A:G.25, A:G.28 NAD.2: 15 residues within 4Å: Chain B: G.22, A.24, G.25, G.26, I.27, D.46, L.47, R.50, C.66, D.67, L.68, G.95, A.96, V.118, V.201 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.22, B:G.26, B:I.27, B:L.47, B:R.50, B:R.50, B:D.67, B:D.67, B:L.68, B:A.69, B:A.96 Water bridges: B:G.25, B:G.28 NAD.3: 15 residues within 4Å: Chain C: G.22, A.24, G.25, G.26, I.27, D.46, L.47, R.50, C.66, D.67, L.68, G.95, A.96, V.118, V.201 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:G.26, C:I.27, C:L.47, C:R.50, C:R.50, C:D.67, C:D.67, C:L.68, C:A.69, C:A.96 Water bridges: C:G.25, C:G.28 NAD.4: 15 residues within 4Å: Chain D: G.22, A.24, G.25, G.26, I.27, D.46, L.47, R.50, C.66, D.67, L.68, G.95, A.96, V.118, V.201 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:G.22, D:G.26, D:I.27, D:L.47, D:R.50, D:R.50, D:D.67, D:L.68, D:A.69, D:A.96 Water bridges: D:G.25, D:G.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sola-Carvajal, A. et al., Crystal Structures and Functional Studies Clarify Substrate Selectivity and Catalytic Residues for the Unique Orphan Enzyme N-Acetyl-D-Mannosamine Dehydrogenase. Biochem.J. (2014)

Release Date

2014-07-09

Peptides

N-ACYLMANNOSAMINE 1-DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

N-ACYLMANNOSAMINE 1-DEHYDROGENASE

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