- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x XJ8: N-[(1S)-2-[(2-amino-5-quinolyl)methylamino]-1-benzyl-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide(Non-covalent)
XJ8.3: 19 residues within 4Å:- Chain A: R.26, H.27, L.28, H.44, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, S.188, S.207, W.208, G.209, G.211, C.212, G.219
- Ligands: GOL.1
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:L.28, A:I.141, A:A.183, A:K.185
- Hydrogen bonds: A:H.27, A:Y.134, A:D.182, A:G.186, A:S.188, A:S.188
- Water bridges: A:L.28, A:K.185, A:S.188, A:V.220
XJ8.9: 19 residues within 4Å:- Chain B: R.26, H.27, L.28, H.44, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, S.188, S.207, W.208, G.209, G.211, C.212, G.219
- Ligands: GOL.7
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:L.28, B:I.141, B:A.183, B:K.185
- Hydrogen bonds: B:H.27, B:Y.134, B:Y.134, B:D.182, B:G.186, B:S.188, B:S.188
- Water bridges: B:L.28, B:K.185, B:S.188, B:V.220
XJ8.15: 19 residues within 4Å:- Chain C: R.26, H.27, L.28, H.44, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, S.188, S.207, W.208, G.209, G.211, C.212, G.219
- Ligands: GOL.13
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:L.28, C:I.141, C:A.183, C:K.185
- Hydrogen bonds: C:H.27, C:Y.134, C:D.182, C:G.186, C:S.188, C:S.188
- Water bridges: C:L.28, C:K.185, C:S.188, C:V.220
- 9 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: T.5, A.6, Q.146
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:A.6
- Water bridges: A:T.5, A:T.5
SO4.5: 8 residues within 4Å:- Chain A: K.117, R.120
- Chain B: K.117, R.120
- Chain C: K.117, R.120
- Ligands: SO4.11, SO4.17
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B- Salt bridges: C:K.117, C:R.120, A:K.117, A:R.120, B:K.117, B:R.120
SO4.6: 2 residues within 4Å:- Chain A: K.195, W.200
3 PLIP interactions:3 interactions with chain A- Water bridges: A:E.11, A:E.11
- Salt bridges: A:K.195
SO4.10: 3 residues within 4Å:- Chain B: T.5, A.6, Q.146
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:A.6
- Water bridges: B:T.5, B:T.5
SO4.11: 8 residues within 4Å:- Chain A: K.117, R.120
- Chain B: K.117, R.120
- Chain C: K.117, R.120
- Ligands: SO4.5, SO4.17
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B- Salt bridges: C:K.117, C:R.120, A:K.117, A:R.120, B:K.117, B:R.120
SO4.12: 2 residues within 4Å:- Chain B: K.195, W.200
3 PLIP interactions:3 interactions with chain B- Water bridges: B:E.11, B:E.11
- Salt bridges: B:K.195
SO4.16: 3 residues within 4Å:- Chain C: T.5, A.6, Q.146
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:A.6
- Water bridges: C:T.5, C:T.5
SO4.17: 8 residues within 4Å:- Chain A: K.117, R.120
- Chain B: K.117, R.120
- Chain C: K.117, R.120
- Ligands: SO4.5, SO4.11
6 PLIP interactions:2 interactions with chain C, 2 interactions with chain A, 2 interactions with chain B- Salt bridges: C:K.117, C:R.120, A:K.117, A:R.120, B:K.117, B:R.120
SO4.18: 2 residues within 4Å:- Chain C: K.195, W.200
3 PLIP interactions:3 interactions with chain C- Water bridges: C:E.11, C:E.11
- Salt bridges: C:K.195
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fjellstrom, O. et al., Creating Novel Activated Factor Xi Inhibitors Through Fragment Based Lead Generation and Structure Aided Drug Design. Plos One (2015)
- Release Date
- 2015-02-11
- Peptides
- COAGULATION FACTOR XI: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 3 x XJ8: N-[(1S)-2-[(2-amino-5-quinolyl)methylamino]-1-benzyl-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide(Non-covalent)
- 9 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Fjellstrom, O. et al., Creating Novel Activated Factor Xi Inhibitors Through Fragment Based Lead Generation and Structure Aided Drug Design. Plos One (2015)
- Release Date
- 2015-02-11
- Peptides
- COAGULATION FACTOR XI: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A