SMTL ID : 4crw.1

Complex of human DDX6 (RECA-C) and CNOT1 (MIF4G)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: N.58, F.59 Chain B: Q.35, R.80, N.81, G.82, A.101 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:Q.35, B:Q.35 Hydrogen bonds: A:N.58 GOL.2: 7 residues within 4Å: Chain A: M.50, S.54, N.86, V.89, L.90, L.105, L.109 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.50 GOL.3: 6 residues within 4Å: Chain A: V.29, E.30, K.33, T.69, L.70, K.71 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.33, A:T.69 Water bridges: A:E.30, A:E.30 GOL.4: 4 residues within 4Å: Chain A: L.191, K.194, F.195, E.198 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.198 GOL.5: 7 residues within 4Å: Chain B: C.60, F.61, Y.62, I.63, M.67, H.71, V.75 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.62, B:H.71 GOL.6: 8 residues within 4Å: Chain B: E.17, K.20, V.21, R.45, L.48, L.49, K.52, F.108 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.17, B:R.45, B:L.49, B:K.52 GOL.7: 5 residues within 4Å: Chain B: Y.14, R.142, L.145, K.146, E.149 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.142, B:R.142, B:R.142, B:E.149

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., A Ddx6-Cnot1 Complex and W-Binding Pockets in Cnot9 Reveal Direct Links between Mirna Target Recognition and Silencing. Mol.Cell (2014)

Release Date

2014-05-07

Peptides

CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1: A
PROBABLE ATP-DEPENDENT RNA HELICASE DDX6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1

PROBABLE ATP-DEPENDENT RNA HELICASE DDX6