SMTL ID : 4cs0.1

Direct visualisation of strain-induced protein post-translational modification

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-4-4-mer

Ligands

4 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 8 residues within 4Å: Chain A: A.42, T.74, N.89, A.91, A.92 Chain C: W.64, R.71, I.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.91 SCN.4: 8 residues within 4Å: Chain C: A.42, T.74, N.89, A.91, A.92 Chain G: W.64, R.71, I.103 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.91 SCN.7: 8 residues within 4Å: Chain A: W.64, R.71, I.103 Chain E: A.42, T.74, N.89, A.91, A.92 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:A.91 SCN.10: 8 residues within 4Å: Chain E: W.64, R.71, I.103 Chain G: A.42, T.74, N.89, A.91, A.92 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:A.91

4 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.2: 25 residues within 4Å: Chain A: R.119 Chain B: W.23, E.25, Y.26, S.65, L.66, R.67, V.68, R.73, R.74, R.75, G.76, V.77, G.78, Q.79, A.100, G.101, V.102, E.103, V.107, M.108, A.110, F.111, A.114 Ligands: MG.3 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:E.25, B:Y.26, B:L.66, B:V.68 Hydrogen bonds: B:L.66, B:V.68, B:R.74, B:R.74, B:G.76, B:G.76, B:V.77, B:G.78, B:Q.79, B:E.103 Water bridges: B:D.104, A:R.119, A:R.119 Salt bridges: B:R.74, A:R.119 pi-Cation interactions: B:R.74, B:R.74 ACO.5: 25 residues within 4Å: Chain C: R.119 Chain D: W.23, E.25, Y.26, S.65, L.66, R.67, V.68, R.73, R.74, R.75, G.76, V.77, G.78, Q.79, A.100, G.101, V.102, E.103, V.107, M.108, A.110, F.111, A.114 Ligands: MG.6 21 PLIP interactions: 18 interactions with chain D, 3 interactions with chain C Hydrophobic interactions: D:E.25, D:Y.26, D:L.66, D:V.68 Hydrogen bonds: D:L.66, D:V.68, D:R.74, D:R.74, D:G.76, D:G.76, D:V.77, D:G.78, D:Q.79, D:E.103 Water bridges: D:D.104, C:R.119, C:R.119 Salt bridges: D:R.74, C:R.119 pi-Cation interactions: D:R.74, D:R.74 ACO.8: 25 residues within 4Å: Chain E: R.119 Chain F: W.23, E.25, Y.26, S.65, L.66, R.67, V.68, R.73, R.74, R.75, G.76, V.77, G.78, Q.79, A.100, G.101, V.102, E.103, V.107, M.108, A.110, F.111, A.114 Ligands: MG.9 21 PLIP interactions: 18 interactions with chain F, 3 interactions with chain E Hydrophobic interactions: F:E.25, F:Y.26, F:L.66, F:V.68 Hydrogen bonds: F:L.66, F:V.68, F:R.74, F:R.74, F:G.76, F:G.76, F:V.77, F:G.78, F:Q.79, F:E.103 Water bridges: F:D.104, E:R.119, E:R.119 Salt bridges: F:R.74, E:R.119 pi-Cation interactions: F:R.74, F:R.74 ACO.11: 25 residues within 4Å: Chain G: R.119 Chain H: W.23, E.25, Y.26, S.65, L.66, R.67, V.68, R.73, R.74, R.75, G.76, V.77, G.78, Q.79, A.100, G.101, V.102, E.103, V.107, M.108, A.110, F.111, A.114 Ligands: MG.12 21 PLIP interactions: 3 interactions with chain G, 18 interactions with chain H Water bridges: G:R.119, G:R.119, H:D.104 Salt bridges: G:R.119, H:R.74 Hydrophobic interactions: H:E.25, H:Y.26, H:L.66, H:V.68 Hydrogen bonds: H:L.66, H:V.68, H:R.74, H:R.74, H:G.76, H:G.76, H:V.77, H:G.78, H:Q.79, H:E.103 pi-Cation interactions: H:R.74, H:R.74

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 7 residues within 4Å: Chain B: T.72, R.73, R.74, R.75, G.76, V.77 Ligands: ACO.2 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.72 MG.6: 7 residues within 4Å: Chain D: T.72, R.73, R.74, R.75, G.76, V.77 Ligands: ACO.5 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.72 MG.9: 7 residues within 4Å: Chain F: T.72, R.73, R.74, R.75, G.76, V.77 Ligands: ACO.8 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.72 MG.12: 7 residues within 4Å: Chain H: T.72, R.73, R.74, R.75, G.76, V.77 Ligands: ACO.11 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:T.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Monteiro, D.C. et al., The Structure of the Pand/Panz Protein Complex Reveals Negative Feedback Regulation of Pantothenate Biosynthesis by Coenzyme A. Chem.Biol. (2015)

Release Date

2015-03-25

Peptides

ASPARTATE 1-DECARBOXYLASE: ACEG
PANZ: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

B
B

D
B

F
B

H
B

ASPARTATE 1-DECARBOXYLASE

PANZ

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