SMTL ID : 4csa.1

Crystal structure of the asymmetric human metapneumovirus M2-1 tetramer bound to a DNA 4-mer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

hetero-3-1-mer

Ligands

1 x DA- DG- DT- DT: 5'-D(*AP*GP*TP*TP*AP)-3'(Non-covalent)

DA-DG-DT-DT.1: 12 residues within 4Å: Chain C: R.5, K.6, A.7, K.10, Y.11, K.16, C.17, N.18, R.19, C.23, K.24, F.25 Protein-ligand interaction information (PLIP) not available

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.9, C.17, C.23, H.27 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.17, A:C.23, A:H.27 ZN.3: 4 residues within 4Å: Chain B: C.9, C.17, C.23, H.27 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.9, B:C.17, B:C.23, B:H.27 ZN.4: 4 residues within 4Å: Chain C: C.9, C.17, C.23, H.27 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.9, C:C.17, C:C.23, C:H.27 ZN.6: 4 residues within 4Å: Chain D: C.9, C.17, C.23, H.27 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.9, D:C.17, D:C.23, D:H.27

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain B: R.35 Chain C: W.32, P.33, D.34 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.35, C:D.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leyrat, C. et al., Drastic Changes in Conformational Dynamics of the Antiterminator M2-1 Regulate Transcription Efficiency in Pneumovirinae. Elife (2014)

Release Date

2014-05-28

Peptides

M2-1: ABD
M2-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
E

C
C

M2-1

M2-1

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