SMTL ID : 4ct1.1

Human PDK1-PKCzeta Kinase Chimera in Complex with Allosteric Compound PS315 Bound to the PIF-Pocket

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: L.40, G.41, E.42, G.43, S.44, S.46, V.48, A.61, K.63, V.95, L.111, S.112, Y.113, A.114, E.118, L.164, T.174 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.43, A:S.44, A:S.44, A:S.44, A:S.46, A:S.46, A:S.112, A:A.114, A:E.118, A:E.118 Water bridges: A:D.175

1 x 31S: (2Z)-3-(biphenyl-4-yl)-5-(4-chlorophenyl)pent-2-enoic acid(Non-covalent)

31S.2: 17 residues within 4Å: Chain A: K.28, K.63, I.64, V.65, K.67, V.70, I.76, V.79, Q.80, E.82, K.83, C.100, F.101, Q.102, L.107, Y.108, L.109 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.79, A:K.83, A:L.107, A:L.107, A:L.107, A:L.109, A:L.109, A:L.109 Salt bridges: A:K.83

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 9 residues within 4Å: Chain A: H.91, P.92, F.93, S.143, W.299, E.300, N.301, L.302, H.303 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.303

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.4: 9 residues within 4Å: Chain A: F.194, V.195, G.196, T.197, A.198, V.201, L.205, E.239, F.243 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.239, A:E.239

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Molecular Mechanism of Regulation of the Atypical Protein Kinase C by N-Terminal Domains and an Allosteric Small Compound. Chem.Biol. (2014)

Release Date

2014-05-28

Peptides

3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1

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