SMTL ID : 4ct9.1

Competence or damage-inducible protein CinA from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

homo-dimer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 8 residues within 4Å: Chain A: L.13, T.18, L.19, D.20, T.21, N.22, G.152, P.153 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.20, A:T.21, A:N.22, A:G.152 Water bridges: A:L.70, A:L.70

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: P.283, G.284, A.285, S.286 Chain B: Y.296, R.377 Ligands: GOL.7 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.284, A:A.285, A:S.286, B:Y.296, B:Y.296 Salt bridges: B:R.377 SO4.6: 8 residues within 4Å: Chain A: Y.296, R.377 Chain B: P.283, G.284, A.285, S.286 Ligands: GOL.3, GOL.4 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.296, B:G.284, B:A.285, B:S.286 Water bridges: A:Y.296, A:R.377 Salt bridges: A:R.377

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: G.341, V.342, A.343, G.344, P.345, D.346 Ligands: GOL.4, SO4.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.341, A:A.343, A:G.344, A:D.346 Water bridges: A:D.346 GOL.4: 9 residues within 4Å: Chain A: S.269, L.270, S.295, Y.296, K.301, L.348 Chain B: S.286 Ligands: GOL.3, SO4.6 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.269, A:K.301, B:S.286 Water bridges: A:Y.296, A:R.377 GOL.7: 8 residues within 4Å: Chain B: G.341, V.342, A.343, G.344, P.345, D.346, R.377 Ligands: SO4.2 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.341, B:A.343, B:G.344, B:D.346, B:D.346, B:R.377 Water bridges: B:D.346 GOL.8: 5 residues within 4Å: Chain A: G.186, R.383 Chain B: F.104, R.107, R.109 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.107, B:R.107, B:R.109, B:R.109, A:R.383 Water bridges: B:N.115, A:S.188 GOL.9: 6 residues within 4Å: Chain B: W.183, G.184, K.211, V.212, G.214, R.383 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.184, B:R.383, B:R.383 Water bridges: B:T.182, B:V.215 GOL.10: 3 residues within 4Å: Chain B: A.317, E.318, R.321 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.321 Water bridges: B:V.368, B:V.368, B:V.368

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karrupiah, V. et al., Competence or Damage-Inducible Protein Cina from Thermus Thermophilus. To be Published

Release Date

2015-01-21

Peptides

CINA-LIKE PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CINA-LIKE PROTEIN

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