SMTL ID : 4ctd.1

X-ray structure of an engineered OmpG loop6-deletion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.68, R.92 Ligand excluded by PLIP CL.2: 1 residues within 4Å: Chain A: R.211 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: M.13, S.239, E.241, Y.259 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: Y.209, T.210 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: R.168, N.170 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: M.13 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: Y.259 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: Y.209, T.210 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: N.162, T.164 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain B: R.211 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: Y.209, E.241 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: E.154, R.168, N.170 Ligand excluded by PLIP

4 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.6: 8 residues within 4Å: Chain A: R.3, N.4, W.6, F.8, F.36, A.38, I.45, L.47 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.8, A:F.36, A:A.38, A:I.45, A:L.47 C8E.7: 4 residues within 4Å: Chain A: G.11, N.234, L.236, V.264 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.264 C8E.15: 2 residues within 4Å: Chain B: N.234, Y.266 No protein-ligand interaction detected (PLIP) C8E.16: 5 residues within 4Å: Chain A: P.116, L.132 Chain B: P.116, W.118, L.132 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:P.116, A:L.132, B:P.116, B:W.118, B:L.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grosse, W. et al., Structure-Based Engineering of a Minimal Porin Reveals Loop- Independent Channel Closure. Biochemistry (2014)

Release Date

2014-08-13

Peptides

OUTER MEMBRANE PROTEIN G: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

OUTER MEMBRANE PROTEIN G