SMTL ID : 4cvh.1

Crystal structure of human isoprenoid synthase domain-containing protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: T.85, R.86, H.87, L.194, E.195, G.197 No protein-ligand interaction detected (PLIP) MG.4: 6 residues within 4Å: Chain B: T.85, R.86, H.87, L.194, E.195, G.197 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.42, E.45, Y.72, Q.73, H.74, L.326 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.74 EDO.5: 6 residues within 4Å: Chain B: Q.42, E.45, Y.72, Q.73, H.74, L.326 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.74

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: R.88, N.92 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: R.88, N.92 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Riemersma, M. et al., Human Ispd is a Cytidyltransferase Required for Dystroglycan O-Mannosylation. Chem.Biol. (2015)

Release Date

2015-02-04

Peptides

ISOPRENOID SYNTHASE DOMAIN-CONTAINING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ISOPRENOID SYNTHASE DOMAIN-CONTAINING PROTEIN