SMTL ID : 4cx0.1

Structure of bovine endothelial nitric oxide synthase Y477A mutant heme domain in complex with 6-((((3S, 5R)-5-(((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY)METHYL)PYRROLIDIN-3-YL)OXY)METHYL)-4- METHYLPYRIDIN-2-AMINE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 17 residues within 4Å: Chain A: W.141, R.146, C.147, V.148, G.149, S.189, F.316, S.317, G.318, W.319, M.321, E.324, V.381, W.410, F.436 Ligands: H4B.2, Q16.3 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:W.141, A:W.141, A:W.141, A:F.316, A:F.316, A:F.316, A:F.316, A:W.319, A:E.324, A:V.381, A:W.410, A:F.436, A:F.436, A:F.436 Water bridges: A:E.324, A:R.328 Salt bridges: A:R.146 pi-Stacking: A:W.141 Metal complexes: A:C.147 HEM.8: 18 residues within 4Å: Chain B: W.141, R.146, C.147, V.148, G.149, S.189, M.302, F.316, S.317, G.318, W.319, M.321, E.324, W.410, F.436 Ligands: H4B.9, Q16.10, ACT.11 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:W.141, B:W.141, B:W.141, B:R.146, B:F.316, B:F.316, B:F.316, B:F.316, B:W.319, B:E.324, B:W.410, B:F.436, B:F.436, B:F.436 Water bridges: B:R.146 Salt bridges: B:R.146 pi-Stacking: B:W.141 Metal complexes: B:C.147

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 12 residues within 4Å: Chain A: S.65, V.67, R.328, A.409, W.410 Chain B: W.408, F.423, H.424, Q.425, E.426 Ligands: HEM.1, GOL.6 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:E.426 Hydrogen bonds: A:R.328, A:A.409, A:W.410 Water bridges: A:R.328 pi-Stacking: A:W.410, A:W.410 pi-Cation interactions: A:W.410 H4B.9: 12 residues within 4Å: Chain A: W.408, F.423, H.424, Q.425, E.426 Chain B: S.65, V.67, R.328, A.409, W.410 Ligands: HEM.8, GOL.13 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.328, B:A.409, B:W.410 Water bridges: B:R.328 pi-Stacking: B:W.410, B:W.410 pi-Cation interactions: B:W.410 Hydrophobic interactions: A:E.426

2 x Q16: 6-((((3S, 5R)-5-(((6-amino-4-methylpyridin-2-yl)methoxy)methyl)pyrrolidin-3-yl)oxy)methyl)-4-methylpyridin-2-amine(Non-covalent)

Q16.3: 11 residues within 4Å: Chain A: V.67, R.146, P.297, V.299, F.316, G.318, W.319, Y.320, M.321, E.324 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.67, A:P.297, A:V.299, A:F.316 Hydrogen bonds: A:R.146, A:M.321, A:E.324 Q16.10: 15 residues within 4Å: Chain B: V.67, L.68, R.146, Q.210, P.297, V.299, F.316, G.318, W.319, Y.320, M.321, E.324, W.410 Ligands: HEM.8, GOL.13 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:V.67, B:L.68, B:P.297, B:V.299, B:F.316 Hydrogen bonds: B:R.146, B:M.321, B:E.324

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: G.149, Q.152, W.319, V.381, S.389 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.152 Hydrogen bonds: A:W.319, A:S.389 ACT.5: 4 residues within 4Å: Chain A: Q.210, R.213, N.329, R.335 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.210, A:N.329 Water bridges: A:S.209, A:Y.294 Salt bridges: A:R.213, A:R.335 ACT.11: 6 residues within 4Å: Chain B: G.149, Q.152, W.319, V.381, S.389 Ligands: HEM.8 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Q.152 Hydrogen bonds: B:S.389, B:S.389 ACT.12: 4 residues within 4Å: Chain B: Q.210, R.213, N.329, R.335 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.210, B:N.329 Salt bridges: B:R.213, B:R.335

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: V.67, R.328, H.334, W.410 Chain B: W.37 Ligands: H4B.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.328, A:R.328, A:H.334 GOL.13: 7 residues within 4Å: Chain A: W.37 Chain B: V.67, R.328, H.334, W.410 Ligands: H4B.9, Q16.10 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.328, B:R.328, B:H.334 Water bridges: B:D.332, A:H.424

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain A: C.57, C.62 Chain B: C.57, C.62, G.64 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.57, A:C.62, B:C.57, B:C.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, H. et al., Mobility of a Conserved Tyrosine Residue Controls Isoform-Dependent Enzyme-Inhibitor Interactions in Nitric Oxide Synthases. Biochemistry (2014)

Release Date

2014-08-13

Peptides

NITRIC OXIDE SYNTHASE, ENDOTHELIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NITRIC OXIDE SYNTHASE, ENDOTHELIAL

Related Entries With Identical Sequence