SMTL ID : 4cyg.2 (1 other biounit)

The structure of vanin-1: defining the link between metabolic disease, oxidative stress and inflammation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 3 residues within 4Å: Chain A: S.419, R.452, F.454 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.359, A:S.419, A:R.452 PEG.2: 4 residues within 4Å: Chain A: L.174, F.175, M.176, E.178 No protein-ligand interaction detected (PLIP)

1 x RRV: (2R)-2,4-dihydroxy-N-[(3S)-3-hydroxy-4-phenylbutyl]-3,3-dimethylbutanamide(Non-covalent)

RRV.3: 13 residues within 4Å: Chain A: E.72, K.171, F.175, E.178, C.204, F.205, A.230, W.231, M.232, V.234, M.267, F.331, E.383 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.175, A:F.175, A:E.178, A:F.205, A:W.231 Hydrogen bonds: A:K.171, A:F.205, A:M.232, A:E.383, A:E.383 Water bridges: A:E.383

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.308, S.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.308 NAG.5: 2 residues within 4Å: Chain A: G.345, N.346 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.345, A:G.345 NAG.6: 5 residues within 4Å: Chain A: E.54, R.116, C.119, L.120, N.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.116, A:R.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boersma, Y.L. et al., The Structure of Vanin-1: A Key Enzyme Linking Metabolic Disease and Inflammation. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-12-10

Peptides

PANTETHEINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PANTETHEINASE

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