SMTL ID : 4czx.1

Complex of Neurospora crassa PAN2 (WD40) with PAN3 (C-TERM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: W.132, S.157, F.194, I.195, N.196, R.213, A.220 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.157, A:R.213 Water bridges: A:N.170, A:R.213 Salt bridges: A:R.213 MES.4: 7 residues within 4Å: Chain C: W.132, S.157, F.194, I.195, N.196, R.213, A.220 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.157, C:R.213 Water bridges: C:N.170, C:R.213 Salt bridges: C:R.213

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: R.91, R.107 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.91, A:R.91, A:Q.112 Salt bridges: A:R.91, A:R.107 PO4.5: 2 residues within 4Å: Chain C: R.91, R.107 5 PLIP interactions: 5 interactions with chain C Water bridges: C:R.91, C:R.91, C:Q.112 Salt bridges: C:R.91, C:R.107

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: W.132, N.170, K.171, R.213 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.170, A:K.171, A:K.171 Water bridges: A:N.170 GOL.6: 4 residues within 4Å: Chain C: W.132, N.170, K.171, R.213 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.170, C:K.171, C:K.171 Water bridges: C:N.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jonas, S. et al., An Asymmetric Pan3 Dimer Recruits a Single Pan2 Exonuclease to Mediate Mrna Deadenylation and Decay. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-06-04

Peptides

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2: AC
PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3

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