SMTL ID : 4czy.1

Complex of Neurospora crassa PAN2 (WD40-CS1) with PAN3 (pseudokinase and C-term)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: W.132, S.157, F.194, I.195, N.196, R.213, A.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.157, A:R.213 Salt bridges: A:R.213 MES.4: 8 residues within 4Å: Chain C: W.132, S.157, N.170, F.194, I.195, N.196, R.213, A.220 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.157 Salt bridges: C:R.213

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 21 residues within 4Å: Chain B: L.43, D.44, N.50, S.51, T.52, S.58, M.60, A.73, R.75, V.104, D.125, F.126, H.127, S.130, E.131, T.132, D.135, S.185, K.186, I.188 Ligands: MG.3 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.50, B:T.52, B:D.125, B:H.127, B:D.135, B:D.135, B:K.186 Salt bridges: B:R.75, B:K.186 ANP.5: 21 residues within 4Å: Chain D: L.43, D.44, N.50, S.51, T.52, S.58, M.60, A.73, R.75, V.104, D.125, F.126, H.127, S.130, E.131, T.132, D.135, S.185, K.186, I.188 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:N.50, D:T.52, D:D.125, D:H.127, D:E.131, D:D.135, D:D.135, D:S.185, D:S.185, D:S.185, D:K.186 Salt bridges: D:R.75, D:K.186

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain B: D.44, S.58 Ligands: ANP.2 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.44 MG.6: 4 residues within 4Å: Chain D: D.44, R.49, S.58 Ligands: ANP.5 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:D.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jonas, S. et al., An Asymmetric Pan3 Dimer Recruits a Single Pan2 Exonuclease to Mediate Mrna Deadenylation and Decay. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-06-04

Peptides

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2: AC
PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN2

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3

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