SMTL ID : 4d07.1

DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5a tail

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-2-2-mer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: G.1, S.2, H.3, M.4, E.33 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.3, A:E.33, H2O.1 CO.4: 5 residues within 4Å: Chain C: G.1, S.2, H.3, M.4, E.33 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.3, C:E.33, H2O.4

2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 6 residues within 4Å: Chain A: V.10, K.12, Y.80, G.82, Q.83 Chain B: D.21 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.12, A:Q.83, A:Q.83, A:Q.83, B:D.21 TRS.5: 6 residues within 4Å: Chain C: V.10, K.12, Y.80, G.82, Q.83 Chain D: D.21 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.12, C:Q.83, C:Q.83

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.7, R.63, G.82, Q.83 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.83 Salt bridges: A:R.7, A:R.63 SO4.6: 4 residues within 4Å: Chain C: R.7, R.63, G.82, Q.83 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.83 Salt bridges: C:R.7, C:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bodor, A. et al., Dynll2 Dynein Light Chain Binds to an Extended Linear Motif of Myosin 5A Tail that Has Structural Plasticity. Biochemistry (2014)

Release Date

2014-10-22

Peptides

DYNEIN LIGHT CHAIN 2, CYTOPLASMIC: AC
MYOSIN VA VARIANT: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

DYNEIN LIGHT CHAIN 2, CYTOPLASMIC

MYOSIN VA VARIANT

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