SMTL ID : 4d0f.1

Human Notch1 EGF domains 11-13 mutant T466A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.44, A:V.45, A:E.47, A:D.61, A:Q.62 CA.2: 6 residues within 4Å: Chain A: V.5, E.7, N.23, T.24, G.26, S.27 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:V.5, A:E.7, A:T.24, A:S.27 CA.3: 5 residues within 4Å: Chain A: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.83, A:E.85, A:D.99, A:K.100, H2O.1 CA.5: 5 residues within 4Å: Chain B: D.44, V.45, E.47, D.61, Q.62 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.44, B:V.45, B:E.47, B:D.61, B:Q.62 CA.6: 6 residues within 4Å: Chain B: V.5, E.7, N.23, T.24, G.26, S.27 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:V.5, B:E.7, B:T.24, B:S.27 CA.7: 5 residues within 4Å: Chain B: N.82, T.83, E.85, D.99, K.100 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.83, B:E.85, B:D.99, B:K.100, H2O.1

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: C.59 No protein-ligand interaction detected (PLIP) EDO.8: 1 residues within 4Å: Chain B: C.59 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, P. et al., Fringe-Mediated Extension of O-Linked Fucose in the Ligand-Binding Region of Notch1 Increases Binding to Mammalian Notch Ligands. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-05-21

Peptides

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

NEUROGENIC LOCUS NOTCH HOMOLOG PROTEIN 1