SMTL ID : 4d0m.3 (2 other biounits)

Phosphatidylinositol 4-kinase III beta in a complex with Rab11a-GTP- gamma-S and the Rab-binding domain of FIP3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 6.00 Å

Oligo State

hetero-4-4-4-mer

Ligands

4 x 093: N-(5-(4-CHLORO-3-(2-HYDROXY-ETHYLSULFAMOYL)- PHENYLTHIAZOLE-2-YL)-ACETAMIDE(Covalent)

093.1: 11 residues within 4Å: Chain A: L.256, P.263, I.329, K.331, Y.365, I.377, E.378, P.379, V.380, A.383, D.456 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.329, A:Y.365, A:Y.365, A:I.377 Hydrogen bonds: A:K.331, A:P.379, A:V.380 093.4: 11 residues within 4Å: Chain C: L.256, P.263, I.329, K.331, I.377, E.378, P.379, V.380, A.383, I.455, D.456 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:I.329, C:I.377, C:I.377, C:P.379, C:I.455 Hydrogen bonds: C:K.331, C:V.380, C:V.380, C:D.456 093.7: 12 residues within 4Å: Chain G: L.256, P.263, I.329, K.331, Y.365, I.377, E.378, P.379, V.380, A.383, I.455, D.456 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:I.329, G:Y.365, G:I.377, G:I.455 Hydrogen bonds: G:K.331, G:V.380, G:V.380 093.10: 11 residues within 4Å: Chain I: L.256, P.263, I.329, K.331, Y.365, I.377, E.378, P.379, V.380, A.383, D.456 8 PLIP interactions: 8 interactions with chain I Hydrophobic interactions: I:I.329, I:Y.365, I:I.377, I:P.379 Hydrogen bonds: I:K.331, I:P.379, I:V.380, I:D.456

4 x GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE(Non-covalent)(Covalent)

GSP.2: 24 residues within 4Å: Chain A: G.37 Chain B: S.23, G.24, V.25, G.26, K.27, S.28, N.29, F.39, N.40, L.41, S.43, S.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, L.159 Ligands: MG.3 22 PLIP interactions: 22 interactions with chain B Hydrogen bonds: B:G.24, B:V.25, B:G.26, B:K.27, B:K.27, B:S.28, B:N.29, B:N.29, B:N.40, B:T.46, B:T.46, B:G.72, B:N.127, B:K.128, B:K.128, B:A.158, B:L.159 Salt bridges: B:K.27, B:D.130 pi-Stacking: B:F.39, B:F.39 pi-Cation interactions: B:K.128 GSP.5: 24 residues within 4Å: Chain C: G.37 Chain D: S.23, G.24, V.25, G.26, K.27, S.28, N.29, F.39, N.40, L.41, S.43, S.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, L.159 Ligands: MG.6 22 PLIP interactions: 22 interactions with chain D Hydrogen bonds: D:G.24, D:V.25, D:G.26, D:K.27, D:K.27, D:S.28, D:N.29, D:N.29, D:N.40, D:S.43, D:T.46, D:T.46, D:G.72, D:N.127, D:K.128, D:A.158, D:L.159 Salt bridges: D:K.27, D:D.130 pi-Stacking: D:F.39, D:F.39 pi-Cation interactions: D:K.128 GSP.8: 24 residues within 4Å: Chain G: G.37 Chain H: G.24, V.25, G.26, K.27, S.28, N.29, F.39, N.40, L.41, E.42, S.43, S.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, L.159 Ligands: MG.9 23 PLIP interactions: 23 interactions with chain H Hydrogen bonds: H:G.24, H:V.25, H:G.26, H:K.27, H:K.27, H:S.28, H:N.29, H:N.29, H:N.40, H:S.43, H:K.44, H:T.46, H:T.46, H:G.72, H:N.127, H:K.128, H:A.158, H:L.159 Salt bridges: H:K.27, H:D.130 pi-Stacking: H:F.39, H:F.39 pi-Cation interactions: H:K.128 GSP.11: 24 residues within 4Å: Chain I: G.37 Chain J: S.23, G.24, V.25, G.26, K.27, S.28, N.29, F.39, N.40, L.41, S.43, S.45, T.46, A.71, G.72, N.127, K.128, D.130, L.131, S.157, A.158, L.159 Ligands: MG.12 24 PLIP interactions: 24 interactions with chain J Hydrogen bonds: J:G.24, J:V.25, J:G.26, J:K.27, J:K.27, J:S.28, J:N.29, J:N.29, J:N.40, J:S.43, J:S.43, J:T.46, J:T.46, J:G.72, J:N.127, J:K.128, J:K.128, J:A.158, J:L.159 Salt bridges: J:K.27, J:D.130 pi-Stacking: J:F.39, J:F.39 pi-Cation interactions: J:K.128

4 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain B: S.28, K.44, T.46, D.69 Ligands: GSP.2 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.28, B:T.46 MG.6: 4 residues within 4Å: Chain D: S.28, T.46, D.69 Ligands: GSP.5 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:S.28, D:T.46 MG.9: 5 residues within 4Å: Chain H: S.28, K.44, T.46, D.69 Ligands: GSP.8 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:S.28, H:T.46 MG.12: 5 residues within 4Å: Chain J: S.28, K.44, T.46, D.69 Ligands: GSP.11 2 PLIP interactions: 2 interactions with chain J Metal complexes: J:S.28, J:T.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burke, J.E. et al., Structures of Pi4Kiiibeta Complexes Show Simultaneous Recruitment of Rab11 and its Effectors. Science (2014)

Release Date

2014-05-28

Peptides

PHOSPHATIDYLINOSITOL 4-KINASE BETA: ACGI
RAS-RELATED PROTEIN RAB-11A: BDHJ
RAB11 FAMILY-INTERACTING PROTEIN 3: EFKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
W

C
Y

G
c

I
g

B
X

D
Z

H
d

J
h

E
a

F
b

K
i

L
j

PHOSPHATIDYLINOSITOL 4-KINASE BETA

RAS-RELATED PROTEIN RAB-11A

RAB11 FAMILY-INTERACTING PROTEIN 3

Related Entries With Identical Sequence