SMTL ID : 4d0q.1

Hyaluronan Binding Module of the Streptococcal Pneumoniae Hyaluronate Lyase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: M.67, I.96, E.97, E.98, V.130, K.132, I.133, K.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.96, A:E.98, A:K.134 EDO.2: 9 residues within 4Å: Chain A: E.97, R.104, L.105, W.106, Y.124, S.125, P.126, T.127 Ligands: EDO.8 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.104, A:R.104, A:T.127, A:T.127 Water bridges: A:L.105 EDO.3: 6 residues within 4Å: Chain A: P.69, I.70, E.71, D.131, K.132 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.70, A:D.131 EDO.4: 3 residues within 4Å: Chain A: E.98, K.101, K.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.101, A:K.103 EDO.5: 8 residues within 4Å: Chain A: L.4, P.69, I.70, E.71, K.74, Y.76, E.155 Ligands: EDO.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.71, A:Y.76, A:E.155 EDO.6: 2 residues within 4Å: Chain A: M.67, K.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.132 EDO.7: 5 residues within 4Å: Chain A: E.6, N.7, G.8, D.9, Q.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.7 Water bridges: A:D.9, A:D.9 EDO.8: 5 residues within 4Å: Chain A: K.73, S.125, P.126, T.127 Ligands: EDO.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.73, A:S.125 Water bridges: A:S.125 EDO.9: 5 residues within 4Å: Chain A: G.22, S.23, E.46, A.47, K.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.23, A:S.23, A:E.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suits, M.D.L. et al., Conformational Analysis of the Streptococcus Pneumoniae Hyaluronate Lyase and Characterization of its Hyaluronan-Specific Carbohydrate-Binding Module. J.Biol.Chem. (2014)

Release Date

2014-08-06

Peptides

HYALURONATE LYASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HYALURONATE LYASE