SMTL ID : 4d11.3 (3 other biounits)

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 peptide and manganese (Lower resolution dataset)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x SER- THR- CYS- PRO- ALA- ALA: PEPTIDE(Non-covalent)

SER-THR-CYS-PRO-ALA-ALA.1: 13 residues within 4Å: Chain A: I.253, V.255, A.266, S.267, L.270, F.280, W.282, W.331, F.361, R.362, K.363, H.365 Ligands: UDP.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.266, A:F.280 Hydrogen bonds: A:S.267, A:R.362, A:Q.364

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.224, H.226, H.359 Ligands: UDP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.224, A:H.226, A:H.359

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.3: 18 residues within 4Å: Chain A: T.143, F.144, H.145, D.176, R.201, G.203, L.204, D.224, S.225, H.226, V.330, W.331, H.359, R.362, H.365 Ligands: SER-THR-CYS-PRO-ALA-ALA.1, SER-THR-CYS-PRO-ALA-ALA.1, MN.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:H.145, A:D.176, A:R.201, A:S.225, A:S.225, A:S.225 Salt bridges: A:H.226, A:H.359, A:R.362, A:H.365, A:H.365

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lira-Navarrete, E. et al., Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N- Acetylgalactosaminyltransferase 2. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-05-28

Peptides

POLYPEPTIDE GALNAC-TRANSFERASE T2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

POLYPEPTIDE GALNAC-TRANSFERASE T2