- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IUP: 5-(HYDRO)PEROXOISOURATE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 4 residues within 4Å:- Chain A: Q.159, W.161, W.175, N.224
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.159
- Water bridges: A:N.224
MPD.6: 4 residues within 4Å:- Chain B: Q.159, W.161, W.175, N.224
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.159
- Water bridges: B:N.224
MPD.10: 4 residues within 4Å:- Chain C: Q.159, W.161, W.175, N.224
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.159
- Water bridges: C:N.224
MPD.14: 4 residues within 4Å:- Chain D: Q.159, W.161, W.175, N.224
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.159
- Water bridges: D:N.224
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 7 residues within 4Å:- Chain A: N.255, H.257, G.287, I.289
- Chain C: T.58
- Ligands: IUP.1, URC.4
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:N.255, A:H.257, A:G.287, C:K.11, C:T.58, C:T.58
- Water bridges: C:D.59
OXY.7: 7 residues within 4Å:- Chain B: N.255, H.257, G.287, I.289
- Chain D: T.58
- Ligands: IUP.5, URC.8
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain D- Hydrogen bonds: B:N.255, B:H.257, B:G.287, D:K.11, D:T.58
- Water bridges: D:T.58
OXY.11: 7 residues within 4Å:- Chain A: T.58
- Chain C: N.255, H.257, G.287, I.289
- Ligands: IUP.9, URC.12
6 PLIP interactions:3 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:N.255, C:H.257, C:G.287, A:K.11, A:T.58
- Water bridges: A:D.59
OXY.15: 7 residues within 4Å:- Chain B: T.58
- Chain D: N.255, H.257, G.287, I.289
- Ligands: IUP.13, URC.16
6 PLIP interactions:3 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:N.255, D:H.257, D:G.287, B:K.11, B:T.58
- Water bridges: B:T.58
- 4 x URC: URIC ACID(Non-covalent)
URC.4: 15 residues within 4Å:- Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Chain C: Y.9, I.55, A.57, T.58, D.59
- Ligands: IUP.1, OXY.3
13 PLIP interactions:10 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255, C:T.58, C:D.59
- Water bridges: A:H.257, A:H.257, C:K.11
- pi-Stacking: A:F.160, A:F.160
URC.8: 15 residues within 4Å:- Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Chain D: Y.9, I.55, A.57, T.58, D.59
- Ligands: IUP.5, OXY.7
12 PLIP interactions:4 interactions with chain D, 8 interactions with chain B- Hydrogen bonds: D:T.58, D:D.59, B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255
- Water bridges: D:K.11, D:T.58
- pi-Stacking: B:F.160, B:F.160
URC.12: 15 residues within 4Å:- Chain A: Y.9, I.55, A.57, T.58, D.59
- Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Ligands: IUP.9, OXY.11
13 PLIP interactions:9 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255, A:T.58, A:D.59
- Water bridges: C:H.257, A:K.11, A:T.58
- pi-Stacking: C:F.160, C:F.160
URC.16: 15 residues within 4Å:- Chain B: Y.9, I.55, A.57, T.58, D.59
- Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255, I.289
- Ligands: IUP.13, OXY.15
12 PLIP interactions:8 interactions with chain D, 4 interactions with chain B- Hydrogen bonds: D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255, B:T.58, B:D.59
- pi-Stacking: D:F.160, D:F.160
- Water bridges: B:K.11, B:T.58
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bui, S. et al., Direct evidence for a peroxide intermediate and a reactive enzyme-substrate-dioxygen configuration in a cofactor-free oxidase. Angew. Chem. Int. Ed. Engl. (2014)
- Release Date
- 2014-10-29
- Peptides
- URICASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.35 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IUP: 5-(HYDRO)PEROXOISOURATE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- 4 x URC: URIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bui, S. et al., Direct evidence for a peroxide intermediate and a reactive enzyme-substrate-dioxygen configuration in a cofactor-free oxidase. Angew. Chem. Int. Ed. Engl. (2014)
- Release Date
- 2014-10-29
- Peptides
- URICASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A