SMTL ID : 4d1q.1

Hermes transposase bound to its terminal inverted repeat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

homo-octamer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: E.62, E.63, L.65 Chain F: G.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.15, B:K.15 NA.2: 4 residues within 4Å: Chain B: E.62, E.63, L.65 Chain D: G.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.62 NA.3: 5 residues within 4Å: Chain G: E.62, E.63, L.64, L.65 Chain L: G.6 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain G Hydrogen bonds: H:K.15, G:L.64 NA.4: 4 residues within 4Å: Chain H: E.62, E.63, L.65 Chain J: G.6 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:L.65 NA.5: 4 residues within 4Å: Chain M: E.62, E.63, L.65 Chain R: G.6 2 PLIP interactions: 2 interactions with chain N Hydrogen bonds: N:K.15, N:K.15 NA.6: 4 residues within 4Å: Chain N: E.62, E.63, L.65 Chain P: G.6 1 PLIP interactions: 1 interactions with chain N Hydrogen bonds: N:L.65 NA.7: 5 residues within 4Å: Chain S: E.62, E.63, L.64, L.65 Chain X: G.6 2 PLIP interactions: 1 interactions with chain S, 1 interactions with chain T Hydrogen bonds: S:L.64, T:K.15 NA.8: 4 residues within 4Å: Chain T: E.62, E.63, L.65 Chain V: G.6 1 PLIP interactions: 1 interactions with chain T Hydrogen bonds: T:E.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hickman, A.B. et al., Structural Basis of Hat Transposon End Recognition by Hermes, an Octameric DNA Transposase from Musca Domestica. Cell(Cambridge,Mass.) (2014)

Release Date

2014-07-30

Peptides

TRANSPOSASE: ABGHMNST

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

G
G

H
H

M
A

N
B

S
G

T
H

TRANSPOSASE