SMTL ID : 4d4d.2 (1 other biounit)

The catalytic domain, BcGH76, of Bacillus circulans Aman6 in complex with 1,6-ManIFG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x IFM: 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE(Non-covalent)

IFM.1: 9 residues within 4Å: Chain A: W.60, D.111, D.112, W.115, W.159, C.170, Y.230, D.281 Ligands: MAN.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.111, A:D.112, A:Y.230, A:Y.230

1 x MAN: alpha-D-mannopyranose(Non-covalent)

MAN.2: 7 residues within 4Å: Chain A: W.159, N.168, C.170, D.215, Y.230, L.282 Ligands: IFM.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.168, A:D.215 Water bridges: A:N.231, A:N.279, A:N.279, A:N.279

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: N.36, W.40, E.84, Q.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.36, A:E.84 Water bridges: A:N.36, A:E.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.J. et al., Evidence for a Boat Conformation at the Transition State of Gh76 Alpha-1,6-Mannanases- Key Enzymes in Bacterial and Fungal Mannoprotein Metabolism. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-03-25

Peptides

ALPHA-1,6-MANNANASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ALPHA-1,6-MANNANASE

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