SMTL ID : 4d4t.1

RSV Matrix protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Q.63, P.70, N.95, L.98, S.102, K.103, L.104, Y.106 Chain B: Y.231 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.63, A:L.104, A:Y.106 Water bridges: A:N.95, B:Y.231, B:E.235 GOL.4: 9 residues within 4Å: Chain A: Y.231 Chain B: Q.63, P.70, N.95, L.98, S.102, K.103, L.104, Y.106 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.63, B:L.104, B:Y.106, B:Y.106 Water bridges: B:N.95, A:Y.231, A:E.235, A:E.235

2 x K: POTASSIUM ION(Non-covalent)

K.2: 7 residues within 4Å: Chain A: N.95, V.96, L.98, L.232, E.233, E.235 Chain B: K.234 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.96, A:L.98, A:L.232, A:E.233, A:E.235 K.5: 7 residues within 4Å: Chain A: K.234 Chain B: N.95, V.96, L.98, L.232, E.233, E.235 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:V.96, B:L.98, B:L.232, B:E.233, B:E.235

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: K.195, I.196, H.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.196 Water bridges: A:K.195, A:K.195 Salt bridges: A:H.246 SO4.6: 3 residues within 4Å: Chain B: K.195, I.196, H.246 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.196 Water bridges: B:K.195, B:K.195 Salt bridges: B:H.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forster, A. et al., Dimerization of Matrix Protein is Required for Budding of Respiratory Syncytial Virus. J.Virol. (2015)

Release Date

2015-03-04

Peptides

MATRIX PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MATRIX PROTEIN