SMTL ID : 4d5i.1

Hypocrea jecorina cellobiohydrolase Cel7A E212Q soaked with xylotriose.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-dimer

Ligands

2 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP.1: 11 residues within 4Å: Chain A: N.37, W.38, R.39, W.40, N.49, Y.82, K.102, N.103, V.104, D.179, K.181 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.182, A:F.182 Hydrogen bonds: A:A.163, A:N.49, A:Y.51 Water bridges: A:W.40, A:W.40, A:T.41, A:D.52, A:N.200 XYP-XYP-XYP.7: 11 residues within 4Å: Chain B: N.37, W.38, R.39, W.40, N.49, Y.82, K.102, N.103, V.104, D.179, K.181 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.49, B:Y.51 Water bridges: B:W.40, B:W.40, B:T.41, B:N.200

4 x CO: COBALT (II) ION(Non-covalent)

CO.2: 2 residues within 4Å: Chain A: H.206, E.239 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.206, A:E.239, H2O.15, H2O.15, H2O.15, H2O.16 CO.3: 7 residues within 4Å: Chain A: E.295, N.301, E.325 Chain B: E.295, N.301, E.325 Ligands: CO.9 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Metal complexes: A:E.295, A:E.325, B:E.295, B:E.295, B:E.325 CO.8: 2 residues within 4Å: Chain B: H.206, E.239 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.206, B:E.239, H2O.38, H2O.38, H2O.38, H2O.39 CO.9: 7 residues within 4Å: Chain A: E.295, N.301, E.325 Chain B: E.295, N.301, E.325 Ligands: CO.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.295, A:E.295, A:E.325, B:E.295, B:E.325

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: N.270, F.273, T.281, P.314 Chain B: S.21, G.22 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:S.21, B:S.21 Water bridges: B:G.22, A:N.270, A:N.270, A:N.270, A:S.272 NAG.10: 6 residues within 4Å: Chain A: S.21, G.22 Chain B: N.270, F.273, T.281, P.314 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.21, A:S.21 Water bridges: A:G.22, B:N.270, B:N.270, B:N.270, B:S.272

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: Q.175, T.246, R.251, P.258, W.376 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.251 Water bridges: A:Q.175 PEG.6: 4 residues within 4Å: Chain A: G.83, T.85, D.94, K.415 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.83, A:K.415 PEG.11: 5 residues within 4Å: Chain B: Q.175, T.246, R.251, P.258, W.376 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.251, B:D.259 Water bridges: B:Q.175 PEG.12: 4 residues within 4Å: Chain B: G.83, T.85, D.94, K.415 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.83, B:K.415 Water bridges: B:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haddad Momeni, M. et al., Structural Insights Into the Inhibition of Cellobiohydrolase Cel7A by Xylooligosaccharides. FEBS J. (2015)

Release Date

2015-03-25

Peptides

CELLULOSE 1,4-BETA-CELLOBIOSIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CELLULOSE 1,4-BETA-CELLOBIOSIDASE

Related Entries With Identical Sequence