SMTL ID : 4d6b.1

Human myelin protein P2, mutant P38G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: D.49, K.67, Q.70 Chain B: G.1 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:G.1, A:Q.70 Water bridges: B:K.46 Salt bridges: B:K.46, A:K.67 SO4.2: 4 residues within 4Å: Chain A: A.38, K.39, S.57, T.58 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.39, A:T.58, A:T.58 SO4.4: 3 residues within 4Å: Chain A: G.28, L.29, R.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.29 Salt bridges: A:R.32 SO4.5: 6 residues within 4Å: Chain A: S.15, E.16, N.17, F.18, D.19, D.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.17, A:F.18, A:D.19, A:N.36 SO4.6: 1 residues within 4Å: Chain A: K.33 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.33 SO4.7: 3 residues within 4Å: Chain A: K.46, K.47, G.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.48 SO4.8: 4 residues within 4Å: Chain A: G.1 Chain B: D.49, K.67, Q.70 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.70, A:G.1 Salt bridges: B:K.67, A:K.46 Water bridges: A:K.46 SO4.9: 4 residues within 4Å: Chain B: A.38, K.39, S.57, T.58 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.39, B:T.58, B:T.58 SO4.11: 3 residues within 4Å: Chain B: G.28, L.29, R.32 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.29 Salt bridges: B:R.32 SO4.12: 6 residues within 4Å: Chain B: S.15, E.16, N.17, F.18, D.19, D.20 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.17, B:F.18, B:D.19, B:N.36 SO4.13: 1 residues within 4Å: Chain B: K.33 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.33 SO4.14: 3 residues within 4Å: Chain B: K.46, K.47, G.48 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.48

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 24 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, G.40, V.42, T.55, S.57, F.59, K.60, T.76, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.18, A:L.25, A:V.27, A:A.38, A:F.59, A:A.77, A:D.78 Hydrogen bonds: A:Y.130 Water bridges: A:R.128 Salt bridges: A:R.108, A:R.128 PLM.10: 24 residues within 4Å: Chain B: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, G.40, V.42, T.55, S.57, F.59, K.60, T.76, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.18, B:L.25, B:V.27, B:A.38, B:F.59, B:A.77, B:D.78 Hydrogen bonds: B:Y.130 Water bridges: B:R.128 Salt bridges: B:R.108, B:R.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laulumaa, S. et al., Dynamics of the Peripheral Membrane Protein P2 from Human Myelin Measured by Neutron Scattering-A Comparison between Wild-Type Protein and a Hinge Mutant. Plos One (2015)

Release Date

2015-05-20

Peptides

MYELIN P2 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

MYELIN P2 PROTEIN

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