SMTL ID : 4d6p.1 (1 other biounit)

RADA C-TERMINAL ATPASE DOMAIN FROM PYROCOCCUS FURIOSUS BOUND TO AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 15 residues within 4Å: Chain A: E.33, F.34, G.35, S.36, G.37, K.38, T.39, Q.40, R.75, E.78, Q.178, R.205, I.224, T.225 Ligands: MG.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.35, A:S.36, A:G.37, A:K.38, A:K.38, A:K.38, A:T.39, A:Q.40, A:E.78, A:Q.178, A:R.205 Water bridges: A:K.38, A:T.39, A:T.39, A:T.39, A:Q.40, A:Q.40, A:Q.40, A:Q.40, A:R.205

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: S.13, V.221, D.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.221

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: T.39 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.39, H2O.2, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marsh, M.E. et al., ATP Half-Sites in Rada and Rad51 Recombinases Bind Nucleotides. FEBS Open Bio (2016)

Release Date

2015-01-14

Peptides

DNA REPAIR AND RECOMBINATION PROTEIN RADA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA REPAIR AND RECOMBINATION PROTEIN RADA

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