SMTL ID : 4d77.1

High-resolution structure of the extracellular olfactomedin domain from gliomedin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: F.157, N.165, N.213, A.214, L.259 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.165, A:A.214, A:A.214, A:L.259

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 5 residues within 4Å: Chain A: A.50, H.267, L.278, P.280 Ligands: MPD.3 No protein-ligand interaction detected (PLIP) MPD.3: 8 residues within 4Å: Chain A: W.62, R.64, L.91, D.265, H.267, Y.269, L.278 Ligands: MPD.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.91, A:D.265 Water bridges: A:R.64 MPD.4: 9 residues within 4Å: Chain A: Y.116, V.168, D.169, E.170, K.171, G.172, L.173, E.193, M.263 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.168 Hydrogen bonds: A:E.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, H. et al., The Olfactomedin Domain from Gliomedin is a Beta-Propeller with Unique Structural Properties. J.Biol.Chem. (2015)

Release Date

2014-12-24

Peptides

GLIOMEDIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLIOMEDIN

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