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SMTL ID : 4d9m.1
Crystal structure of Diaminopropionate ammonia lyase from Escherichia coli in complex with aminoacrylate-PLP azomethine reaction intermediate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.50 Å
Oligo State
homo-dimer
Ligands
2 x
0JO
:
2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid
(Non-covalent)
0JO.1:
18 residues within 4Å:
Chain A:
F.76
,
K.77
,
T.119
,
D.120
,
N.122
,
H.123
,
Q.230
,
A.231
,
G.232
,
V.233
,
G.234
,
A.235
,
M.236
,
G.288
,
L.289
,
S.339
,
T.376
,
E.377
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:L.289
,
A:E.377
Hydrogen bonds:
A:D.120
,
A:N.122
,
A:N.122
,
A:H.123
,
A:G.232
,
A:V.233
,
A:G.234
,
A:A.235
,
A:M.236
Water bridges:
A:A.237
Salt bridges:
A:K.77
,
A:K.77
pi-Stacking:
A:F.76
0JO.2:
18 residues within 4Å:
Chain B:
F.76
,
K.77
,
T.119
,
D.120
,
G.121
,
N.122
,
H.123
,
A.231
,
G.232
,
V.233
,
G.234
,
A.235
,
M.236
,
G.288
,
L.289
,
S.339
,
T.376
,
E.377
17
PLIP interactions
:
17 interactions with chain B
Hydrophobic interactions:
B:L.289
,
B:E.377
Hydrogen bonds:
B:T.119
,
B:D.120
,
B:N.122
,
B:N.122
,
B:H.123
,
B:G.232
,
B:V.233
,
B:G.234
,
B:A.235
,
B:M.236
,
B:T.376
Water bridges:
B:A.237
Salt bridges:
B:K.77
,
B:K.77
pi-Stacking:
B:F.76
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Bisht, S. et al., Crystal Structure of Escherichia coli Diaminopropionate Ammonia-lyase Reveals Mechanism of Enzyme Activation and Catalysis. J.Biol.Chem. (2012)
Release Date
2012-04-25
Peptides
Diaminopropionate ammonia-lyase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Diaminopropionate ammonia-lyase
Related Entries With Identical Sequence
4d9g.1
|
4d9i.1
|
4d9k.1
|
4d9k.2
|
4d9n.1
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