SMTL ID : 4d9t.2 (1 other biounit)

Rsk2 C-terminal Kinase Domain with inhibitor (E)-methyl 3-(4-amino-7-(3-hydroxypropyl)-5-p-tolyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-2-cyanoacrylate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 0JG: methyl (2S)-3-{4-amino-7-[(1E)-3-hydroxyprop-1-en-1-yl]-5-(4-methylphenyl)-7H-pyrrolo[2,3-d]pyrimidin-6-yl}-2-cyanopropanoate(Non-covalent)

0JG.1: 15 residues within 4Å: Chain A: I.30, S.36, C.38, A.51, K.53, L.69, I.79, V.93, T.95, E.96, L.97, M.98, L.148, C.162, D.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:K.53, A:L.69, A:I.79, A:V.93, A:T.95 Hydrogen bonds: A:T.95, A:E.96, A:M.98, A:D.163 Salt bridges: A:K.53 0JG.3: 15 residues within 4Å: Chain B: I.30, S.36, C.38, A.51, K.53, L.69, I.79, V.93, T.95, E.96, L.97, M.98, L.148, C.162, D.163 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:K.53, B:L.69, B:I.79, B:V.93, B:T.95 Hydrogen bonds: B:T.95, B:E.96, B:M.98 Salt bridges: B:K.53

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: G.73, Q.74, H.75, I.78, I.79, T.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.80 NA.4: 6 residues within 4Å: Chain B: G.73, Q.74, H.75, I.78, I.79, T.80 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serafimova, I.M. et al., Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles. Nat.Chem.Biol. (2012)

Release Date

2012-04-25

Peptides

Ribosomal protein S6 kinase alpha-3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Ribosomal protein S6 kinase alpha-3

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