SMTL ID : 4db3.2 (1 other biounit)

1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.181, C.201, C.203, C.208 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.181, A:C.201, A:C.203, A:C.208 ZN.6: 4 residues within 4Å: Chain B: H.181, C.201, C.203, C.208 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.181, B:C.201, B:C.203, B:C.208

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: F.41, S.314, R.318 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.155, G.277, G.278 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: F.41, S.314, R.318 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: G.155, G.277, G.278 Ligand excluded by PLIP

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.122, S.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.123, A:S.123, A:S.123 SO4.9: 2 residues within 4Å: Chain B: R.122, S.123 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.123, B:S.123, B:S.123

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: V.168, F.169, S.170, G.171 Chain B: P.147, H.271 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.170, A:S.170, A:G.171, A:G.171 Water bridges: A:S.170 GOL.10: 6 residues within 4Å: Chain A: P.147, H.271 Chain B: V.168, F.169, S.170, G.171 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.170, B:S.170, B:G.171, B:G.171 Water bridges: B:S.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.95 Angstrom Resolution Crystal Structure of N-acetyl-D-glucosamine kinase from Vibrio vulnificus. TO BE PUBLISHED

Release Date

2012-01-25

Peptides

N-acetyl-D-glucosamine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

N-acetyl-D-glucosamine kinase

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