SMTL ID : 4dbr.1

Myosin VI D179Y (MD) pre-powerstroke state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 9 residues within 4Å: Chain A: F.203, G.204, I.454, A.455, I.470, C.473, N.474, F.644 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.203, A:A.455, A:I.470, A:N.474 EDO.2: 8 residues within 4Å: Chain A: R.77, D.81, R.82, I.83, Y.84, I.100, I.103, P.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.77, A:I.83, A:Y.84, A:Y.84 EDO.3: 10 residues within 4Å: Chain A: R.202, F.203, G.204, Y.225, L.226, L.227, E.228, A.455, I.470 Ligands: EDO.1 No protein-ligand interaction detected (PLIP) EDO.4: 6 residues within 4Å: Chain A: N.89, I.90, I.485, E.489, M.698, P.703 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.89, A:N.89, A:E.489 EDO.5: 6 residues within 4Å: Chain A: E.149, R.196, E.458, Y.459, K.667, L.670 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.196, A:Y.459, A:K.667 EDO.6: 7 residues within 4Å: Chain A: N.281, K.282, D.285, Y.297, G.301, S.302, K.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.302, A:K.304 EDO.7: 4 residues within 4Å: Chain A: S.223, H.224, Y.225, Q.647 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.223, A:H.224 Water bridges: A:H.224 EDO.8: 4 residues within 4Å: Chain A: V.503, H.504, Y.505, D.507 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.504, A:Y.505, A:D.507

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.9: 21 residues within 4Å: Chain A: I.83, N.95, P.96, Y.97, F.98, D.99, Y.104, E.149, S.150, G.151, A.152, G.153, K.154, T.155, E.156, F.160, N.197, N.199, L.307 Ligands: MG.10, VO4.11 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.95, A:Y.104, A:Y.104, A:G.151, A:A.152, A:G.153, A:K.154, A:T.155, A:E.156, A:N.197, A:N.199 Water bridges: A:T.155, A:E.156, A:N.157, A:N.199, A:S.201, A:S.201, A:D.305 Salt bridges: A:K.154

1 x MG: MAGNESIUM ION(Non-covalent)

MG.10: 4 residues within 4Å: Chain A: T.155, S.201 Ligands: ADP.9, VO4.11 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.155, A:S.201, H2O.28, H2O.28

1 x VO4: VANADATE ION(Non-covalent)

VO4.11: 10 residues within 4Å: Chain A: S.150, G.151, K.154, N.197, S.200, S.201, A.455, G.456 Ligands: ADP.9, MG.10 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.151, A:K.154, A:N.197, A:S.200, A:S.201, A:R.202, A:G.456 Water bridges: A:S.150, A:N.191, A:S.201, A:G.456

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, L. et al., Mutations in myosin VI that cause a loss of coordination between heads provide insights into the structural changes underlying force generation and the importance of gating. To be Published

Release Date

2013-01-30

Peptides

Myosin-VI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myosin-VI