SMTL ID : 4dcb.1

Y. pestis Plasminogen Activator Pla in Complex with Human Plasminogen Activation Loop Peptide ALP11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 3 residues within 4Å: Chain A: A.47, L.71, A.72 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.47, A:L.71, A:L.71, A:A.72 MRD.2: 5 residues within 4Å: Chain A: I.181, N.182, D.183, F.184, Y.229 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.182, A:D.183 Hydrogen bonds: A:N.182 MRD.3: 5 residues within 4Å: Chain A: A.14, S.15, T.16, A.282, G.283 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.282 MRD.4: 3 residues within 4Å: Chain A: Y.122, Y.179 Ligands: MPD.6 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.122, A:Y.179

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.5: 4 residues within 4Å: Chain A: T.232, A.235, L.284, Y.286 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.284, A:Y.286 MPD.6: 1 residues within 4Å: Ligands: MRD.4 No protein-ligand interaction detected (PLIP)

1 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.7: 7 residues within 4Å: Chain A: L.63, N.64, L.110, N.111, V.112, A.128, Y.130 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.112

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.8: 6 residues within 4Å: Chain A: Y.122, A.124, A.176, G.177, Y.179, F.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.122, A:Y.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eren, E. et al., Structural basis for activation of an integral membrane protease by lipopolysaccharide. J.Biol.Chem. (2012)

Release Date

2012-06-06

Peptides

Coagulase/fibrinolysin: A
Plasminogen: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

Membrane

We predict this structure to be a membrane protein.
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Coagulase/fibrinolysin

Plasminogen