SMTL ID : 4dcm.1

Crystal Structure of methyltransferase RlmG modifying G1835 of 23S rRNA in Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 16 residues within 4Å: Chain A: F.202, A.211, D.228, G.230, C.231, G.232, I.236, D.253, E.254, N.282, N.283, A.284, N.299, P.300, P.301, M.316 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.202 Hydrogen bonds: A:C.231, A:G.232, A:E.254, A:N.283, A:A.284, A:N.299 Water bridges: A:G.234, A:D.253, A:N.299 pi-Cation interactions: A:F.202

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: K.325, I.326 Ligands: PEG.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.326 PEG.3: 4 residues within 4Å: Chain A: K.325, I.326, N.327 Ligands: PEG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Structural insights into the function of 23S rRNA methyltransferase RlmG (m2G1835) from Escherichia coli. Rna (2012)

Release Date

2012-08-01

Peptides

Ribosomal RNA large subunit methyltransferase G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribosomal RNA large subunit methyltransferase G