SMTL ID : 4de7.1

Crystal structure of glucosyl-3-phosphoglycerate synthase from Mycobacterium tuberculosis in complex with Mg2+ and uridine-diphosphate (UDP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 10 residues within 4Å: Chain A: P.70, A.71, L.72, E.74, S.101, G.133, K.134, S.155, D.156, Y.249 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.72, A:Y.249 Hydrogen bonds: A:L.72, A:E.74, A:E.74, A:S.101, A:S.101, A:G.133, A:S.155, A:D.156 UDP.4: 10 residues within 4Å: Chain B: P.70, A.71, L.72, E.74, S.101, G.133, K.134, S.155, D.156, Y.249 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:L.72, B:Y.249 Hydrogen bonds: B:L.72, B:E.74, B:E.74, B:S.101, B:S.101, B:G.133, B:S.155, B:D.156

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.204, T.207, R.276, H.278, N.280 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.204, A:T.207, A:T.207, A:R.276, A:N.280 GOL.3: 3 residues within 4Å: Chain A: R.117, V.118, Q.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.117 GOL.5: 5 residues within 4Å: Chain B: G.204, T.207, R.276, H.278, N.280 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.204, B:T.207, B:T.207, B:R.276, B:N.280 GOL.6: 3 residues within 4Å: Chain B: R.117, V.118, Q.123 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Urresti, S. et al., Mechanistic insights into the retaining glucosyl-3-phosphoglycerate synthase from mycobacteria. J.Biol.Chem. (2012)

Release Date

2012-06-06

Peptides

GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GpgS): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GLUCOSYL-3-PHOSPHOGLYCERATE SYNTHASE (GpgS)

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