- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x NAR: NARINGENIN(Non-covalent)(Covalent)
NAR.5: 13 residues within 4Å:- Chain A: K.7, L.9, A.100, S.109, T.110, T.111
- Chain B: S.107
- Chain C: K.7, L.9, A.100, L.102, V.113
- Ligands: NAR.18
14 PLIP interactions:6 interactions with chain C, 3 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: C:L.9, C:A.100, C:L.102, A:K.7, A:A.100
- Hydrogen bonds: C:K.7, C:K.7, B:S.107
- Water bridges: C:S.109, B:S.107, B:Y.108, A:S.109, A:S.109, A:S.109
NAR.10: 13 residues within 4Å:- Chain B: K.7, A.100, L.102, S.109, V.113
- Chain C: S.107
- Chain D: K.7, L.9, A.100, S.109, T.110, T.111
- Ligands: NAR.23
17 PLIP interactions:5 interactions with chain D, 3 interactions with chain C, 9 interactions with chain B- Hydrophobic interactions: D:L.9, D:A.100, B:K.7, B:A.100, B:L.102
- Hydrogen bonds: D:K.7, D:K.7, D:T.111, C:S.107, B:K.7
- Water bridges: C:S.107, C:S.109, B:K.7, B:S.109, B:S.109, B:S.109, B:S.109
NAR.18: 13 residues within 4Å:- Chain A: K.7, L.9, A.100, L.102, V.113
- Chain C: K.7, L.9, A.100, S.109, T.110, T.111
- Chain D: S.107
- Ligands: NAR.5
14 PLIP interactions:7 interactions with chain A, 4 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: A:L.9, A:A.100, A:L.102, C:K.7, C:A.100
- Hydrogen bonds: A:K.7, A:K.7, D:S.107
- Water bridges: A:S.109, A:S.109, C:S.109, C:S.109, D:S.107, D:Y.108
NAR.23: 13 residues within 4Å:- Chain A: S.107
- Chain B: K.7, L.9, A.100, S.109, T.110, T.111
- Chain D: K.7, A.100, L.102, S.109, V.113
- Ligands: NAR.10
17 PLIP interactions:5 interactions with chain B, 5 interactions with chain A, 7 interactions with chain D- Hydrophobic interactions: B:L.9, B:A.100, D:K.7, D:A.100, D:L.102
- Hydrogen bonds: B:K.7, B:K.7, B:T.111, A:S.107, D:K.7
- Water bridges: A:S.107, A:S.109, A:S.109, A:S.109, D:K.7, D:S.109, D:S.109
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Trivella, D.B. et al., Flavonoid interactions with human transthyretin: Combined structural and thermodynamic analysis. J.Struct.Biol. (2012)
- Release Date
- 2012-11-21
- Peptides
- Transthyretin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x NAR: NARINGENIN(Non-covalent)(Covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Trivella, D.B. et al., Flavonoid interactions with human transthyretin: Combined structural and thermodynamic analysis. J.Struct.Biol. (2012)
- Release Date
- 2012-11-21
- Peptides
- Transthyretin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B